View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_13 (Length: 399)
Name: NF10132_low_13
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 49165262 - 49165629
Alignment:
| Q |
14 |
agaagttaaaagtaaaactattatgtcatataaaggtaaatctcaacatcattgtcgtgactccctttgggaagttgaagttgaatcaagcagtattgtc |
113 |
Q |
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| T |
49165262 |
agaagttaaaagtaaaactattatgtcatataaaggtaaatctcaacatcattgtcgtgactccctttgggaaattgaagttgaatcaagcagtattgtc |
49165361 |
T |
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| Q |
114 |
aagactgaatttgaacaaatcacgatcgttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctannn |
213 |
Q |
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| T |
49165362 |
aagactgaatttgaacaaatcacgattgttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctattt |
49165461 |
T |
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| Q |
214 |
nnnnatgactcacgattgacaacactagaatcaagnnnnnnnnntgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatac |
313 |
Q |
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| T |
49165462 |
ttttatgactcacgattgacaacactagaatcaag--aaaaaaatgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatac |
49165559 |
T |
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| Q |
314 |
ttttgttggcatacctcaggaacgaaggaaactcaaagaaactcactgcagactaggccatgctccttca |
383 |
Q |
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| T |
49165560 |
ttttgttggcatacctcaggaacgaaggaaactcaaagaaactcactgcaggctaggccatgctccttca |
49165629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 40935179 - 40935228
Alignment:
| Q |
120 |
gaatttgaacaaatcacgatcgttctaccatacactatttaatacaaaat |
169 |
Q |
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| T |
40935179 |
gaatttgaacaaattgctatcgttctactatacattatttaatacaaaat |
40935228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 43751932 - 43752004
Alignment:
| Q |
278 |
aaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaaggaaactcaaa |
350 |
Q |
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| T |
43751932 |
aaatagatgtagcttatttgtaaattgtttttttgcttttgttggcatactataggaaagaaggcaactcaaa |
43752004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 35304014 - 35303966
Alignment:
| Q |
120 |
gaatttgaacaaatcacgatcgttctaccatacactatttaatacaaaa |
168 |
Q |
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| T |
35304014 |
gaatttgaaaaaatcactattgttctcccatacactatttagtacaaaa |
35303966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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