View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_15 (Length: 381)
Name: NF10132_low_15
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 33915606 - 33915967
Alignment:
| Q |
20 |
accggaacgcatcggtcatttttcggctctgactgattttattgtttttcagaacaatttatcaggtaatcttcctcaagattttggtaggtactctaaa |
119 |
Q |
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| T |
33915606 |
accggaacgcatcggtcatttttcggctctgactgattttattgtttttcagaacaatttatcaggtaatcttcctcaagattttggtaggtactctaaa |
33915705 |
T |
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| Q |
120 |
ctcgaaacttttcagatttcatctaatagtttcaatggaaggttaccagaaaatttgtgctatcatggaaggttagttggtttaatggtttttgacaata |
219 |
Q |
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| T |
33915706 |
ctcgaaacttttcagatttcatctaatagtttcaatggaaggttaccagaaaatttgtgctatcatggaaggttagttggtttaatggtttttgacaata |
33915805 |
T |
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| Q |
220 |
atctgagtggtgagttgccaaaatctttaggtagttgtagcagtttacagtatctgagagttgagaacaatgagttttctggtaacattcctaatggttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33915806 |
atctgagtggtgagttgccaaaatctttaggtagttgtagcagtttacagtatctgagagttgagaacaatgagttttctggtaacattcctaatggttt |
33915905 |
T |
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| Q |
320 |
atggacatctatgaatttgtcgcaacttatgttaagtgagaacaaattcaccggtgagcttc |
381 |
Q |
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| T |
33915906 |
atggacatctacgaatttgtcgcaacttatgttaagtgagaacaaattcaccggtgagcttc |
33915967 |
T |
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