View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_18 (Length: 349)
Name: NF10132_low_18
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 49126439 - 49126760
Alignment:
| Q |
14 |
ctaaatattgtaacaggttgtggagatcactaaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggtacaaaccaatttcctg |
113 |
Q |
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| T |
49126439 |
ctaaatattgttacaggttgtggagatcactaaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggtacaaaccaatttcctg |
49126538 |
T |
|
| Q |
114 |
cttgcttattgaaatgttgtaatttgaaacagattttccacccaactccaattacagatgacttttttccttatcaatttgtctgtctgtctttagattg |
213 |
Q |
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| T |
49126539 |
cttgcttattgaaatgttgtaatttgaaacagatttcccacccaactccaattacagatgacttttttccttatcaatttgtctgtctgtctttagattg |
49126638 |
T |
|
| Q |
214 |
ctcttcttaacatttgaacatttctcaggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaa |
313 |
Q |
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| T |
49126639 |
ctcttcttaacatttgaacatttctcaggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaa |
49126738 |
T |
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| Q |
314 |
gacaatgatccaattgatgtcc |
335 |
Q |
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| T |
49126739 |
gacaatgatccaattgatgtcc |
49126760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 8800263 - 8800167
Alignment:
| Q |
238 |
tcaggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtc |
334 |
Q |
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| T |
8800263 |
tcaggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtc |
8800167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 8800415 - 8800344
Alignment:
| Q |
27 |
caggttgtggagatcactaaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggta |
98 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||| | ||||||||| |
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| T |
8800415 |
caggttgtagagatcactaagggaagtaaggtcaaatatgaacttgacaaaaagactggaatgattaaggta |
8800344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 32815378 - 32815325
Alignment:
| Q |
45 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggta |
98 |
Q |
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| T |
32815378 |
aaaggaagcaaggttaaatatgaactggacaagaaaagcggacttattaaggta |
32815325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 29368057 - 29368109
Alignment:
| Q |
45 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggt |
97 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
29368057 |
aaaggaaacaaggtgaaatatgaacttgacaagaaaactggacttattaaggt |
29368109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 43547815 - 43547867
Alignment:
| Q |
45 |
aaaggaagcaaggtcaaatatgaacttgacaagaaaactggattaattaaggt |
97 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
43547815 |
aaaggaaacaaggtcaaatatgaacttgacaaaaaaactggacttattaaggt |
43547867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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