View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10132_low_2 (Length: 731)

Name: NF10132_low_2
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10132_low_2
NF10132_low_2
[»] chr8 (2 HSPs)
chr8 (332-720)||(34409141-34409529)
chr8 (18-202)||(34408830-34409014)
[»] chr2 (2 HSPs)
chr2 (391-477)||(43853134-43853220)
chr2 (66-154)||(43851749-43851837)
[»] chr6 (2 HSPs)
chr6 (391-518)||(7979381-7979508)
chr6 (102-154)||(7980045-7980097)
[»] chr7 (1 HSPs)
chr7 (391-536)||(14198760-14198905)
[»] chr3 (2 HSPs)
chr3 (66-202)||(38827917-38828053)
chr3 (411-486)||(38827385-38827460)
[»] chr4 (1 HSPs)
chr4 (403-476)||(42986374-42986447)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 332 - 720
Target Start/End: Original strand, 34409141 - 34409529
Alignment:
Q  332 ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409141 ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga 34409240  T
Q  432 aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409241 aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa 34409340  T
Q  532 caactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaa 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409341 caactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaa 34409440  T
Q  632 ttagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgccccagcttcaactctatttctgctgtctct 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409441 ttagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgccccagcttcaactctatttctgctgtctct 34409529  T

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Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 34408830 - 34409014
Alignment:
Q  18 atattgattggaaacatgtcgtcgtcagatgatattgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggt 117  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34408830 atattgatcggaaacatgtcatcgtcagatgatgttgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggt 34408929  T
Q  118 ggtactctgcttttcacaatatcacggccatggttggcgccggcgttctcacccttccttacgccatgtctaagatgggatggta 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34408930 ggtactctgcttttcacaatatcacggccatggttggcgccggcgttctcacccttccttacgccatgtctaagatgggatggta 34409014  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 43853134 - 43853220
Alignment:
Q  391 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag 477  Q
    ||||||||||||||  | | |||||||||||||||||||||||||||||||||||| ||||||| | | ||||| ||||| ||||||    
T  43853134 tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag 43853220  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 43851749 - 43851837
Alignment:
Q  66 aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg 154  Q
    ||||| || ||||||||||||||| | ||| | || ||||| || |||||||||||| | |||||||||||| | || |||||||||||    
T  43851749 aaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttgg 43851837  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 518
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
Q  391 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg 490  Q
    |||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || |||||  | ||||||||||    
T  7979508 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg 7979409  T
Q  491 cttttggaccaaaattgggtctatatat 518  Q
    |||||||   |||||| ||||| |||||    
T  7979408 cttttgggaaaaaattaggtctttatat 7979381  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 7980097 - 7980045
Alignment:
Q  102 aggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg 154  Q
    ||||| || |||||||||||||| |||||||||||| |||| |||||||||||    
T  7980097 aggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttgg 7980045  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 536
Target Start/End: Complemental strand, 14198905 - 14198760
Alignment:
Q  391 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg 490  Q
    |||||| | |||||||| | |||  |||||||||||||||| |||||||||||||| || || | | | || || || |||||||| || |||||| |||    
T  14198905 tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg 14198806  T
Q  491 cttttggaccaaaattgggtctatatatcattgttccacaacaact 536  Q
    |||||||   ||| |||||||| |||||  |||| |||||||||||    
T  14198805 cttttggtgaaaagttgggtctgtatattgttgtgccacaacaact 14198760  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 38828053 - 38827917
Alignment:
Q  66 aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgccggcgttc 165  Q
    |||||||| |||||||||||||| || ||||| || || || |||||||||||||| || || || |||||| | || ||||||||||| || || ||||    
T  38828053 aaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcggcgttccacaatctaacagccatggttggtgctggtgttc 38827954  T
Q  166 tcacccttccttacgccatgtctaagatgggatggta 202  Q
    |||  ||||| || || |||||  | |||||||||||    
T  38827953 tcagtcttccatatgcaatgtcccatatgggatggta 38827917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 486
Target Start/End: Complemental strand, 38827460 - 38827385
Alignment:
Q  411 cactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa 486  Q
    |||| |||||||||||||||| ||||||||||| || || ||||  ||||| || |||||||||||| | ||||||    
T  38827460 cactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa 38827385  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 42986447 - 42986374
Alignment:
Q  403 acattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatga 476  Q
    ||||||| ||||  |||||||||| ||||||||||||||   ||  |||||| ||||||||||| |||||||||    
T  42986447 acattgtacactgcatggcaaatgattgaaatgcatgaatccgtatcaggaaaaagatttgacaagtatcatga 42986374  T

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