View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10132_low_20 (Length: 336)
Name: NF10132_low_20
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 2215012 - 2215320
Alignment:
| Q |
19 |
caattggcattgcctgcaattgctgagtcccctttgcagcataaatagttggttgagttgtatccctatcttggtccaccagcagttagtctaagtaata |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2215012 |
caattggcattgcctgcaattgctgag-cccctttgcagcataaatagttggttgagttgtatcactatcttggtccaccggcagttagtctaagtaata |
2215110 |
T |
|
| Q |
119 |
gcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2215111 |
gcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgca |
2215210 |
T |
|
| Q |
219 |
ttgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtatggctagcagaaattaatgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215211 |
ttgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtatggctagcagaaattaatgt |
2215310 |
T |
|
| Q |
319 |
ctcctttgct |
328 |
Q |
| |
|
||| |||||| |
|
|
| T |
2215311 |
ctcttttgct |
2215320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 2202420 - 2202723
Alignment:
| Q |
20 |
aattggcattgcctgcaattgct--gagtcccctttgcagcataaatagttggttgagttgtatccctatcttggtccaccagcagttagtctaagtaat |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |||||| ||||| | |||||||| ||||||| | |
|
|
| T |
2202420 |
aattggcattgcctgcaatttctctgagtcccctatgcagcataaatagttggttgagttgtatcactatctcggtcctctggcagttagcctaagtact |
2202519 |
T |
|
| Q |
118 |
agcggaatgtgtggaaagaaataagttaacataattgttagttgttacgcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgt |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2202520 |
agtggaatgtgtggaaagaaataagttaacatacttgttat-------gcaattcaagtaagaaaaataaggatgatatcaggtcaatggaaacttatgc |
2202612 |
T |
|
| Q |
218 |
attgtttgaatagttgacttgggtcaatttttgtagatacatatgcattagaagttatttttctaaacctcattacaagtatggctagcagaaattaatg |
317 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2202613 |
attgattggttagttgacttgggtcaatttttatagatacatatgcattaaaagttatttttctaaacctcattacaagtatggcttgcagaaattaatg |
2202712 |
T |
|
| Q |
318 |
tctcctttgct |
328 |
Q |
| |
|
|||| |||||| |
|
|
| T |
2202713 |
tctcttttgct |
2202723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University