View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_23 (Length: 302)
Name: NF10132_low_23
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 36072971 - 36072687
Alignment:
| Q |
1 |
atgaaggaaagaagctaattggttaccatgtctcaaactggtgtgtagatagaattgaaagaagctaataggctacatgttcaaaattttcaactcactg |
100 |
Q |
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| T |
36072971 |
atgaaggaaagaagctaattggttaccatgtctcaaactggtgtgtagatagaattgaaagaagctaataggctacatgttcaaaattttcaactcactg |
36072872 |
T |
|
| Q |
101 |
atatccttgaattcaaagaaacaaacaactgtagcactatcaacttgtgaagttgaattcatatcagcttgcactacaacatgtcaagcattgcggttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072871 |
atatccttgaattcaaagaaacaaacaactgtagcactatcaacttgtgaagttgaattcatatcagcttgcactacaacatgtcaagcattgcggttgt |
36072772 |
T |
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| Q |
201 |
aatcactgctacttaaaatgaagataagtgtaggagagcaaattaagctattggtggacaataaatttgctgaaaaccttgtaag |
285 |
Q |
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| T |
36072771 |
aatcactgctacttaaaatgaagataagtgtaggagagcaaattaagctattggtggacaataaatttgctgacaaccttgtaag |
36072687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 12696164 - 12695973
Alignment:
| Q |
75 |
acatgttcaaaattttcaactcactgatatccttgaattcaaagaaacaaacaactgtagcactatcaacttgtgaagttgaattcatatcagcttgcac |
174 |
Q |
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| T |
12696164 |
acatgttcaaaattttcaactcaccattctcccggagttcaaagaaacaaacagttgtagcactgtcaacttgtgaagttgaatacatatcgccttgcaa |
12696065 |
T |
|
| Q |
175 |
tacaacatgtcaagcattgcggttgtaatcactgctacttaaaatgaagataagtgtaggagagcaaattaagctattggtggacaataaat |
266 |
Q |
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| T |
12696064 |
tgcaacatgataaggattatggttacaataacttctacttgaaatgaagataggtgtaggagaacaaattgagttgttggtggaaaataaat |
12695973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 266
Target Start/End: Complemental strand, 12447659 - 12447467
Alignment:
| Q |
74 |
tacatgttcaaaattttcaactcactgatatccttgaattcaaagaaacaaacaactgtagcactatcaacttgtgaagttgaattcatatcagcttgca |
173 |
Q |
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||||| |||| ||||||||||| || || || | || |||||||||||| |||| | ||||||| ||||||||||||| | || |||||||| ||||| |
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| T |
12447659 |
tacattttcagaattttcaactaaccaatctcatagagttcaaagaaacatacaattctagcactgtcaacttgtgaagctatatacatatcagtttgca |
12447560 |
T |
|
| Q |
174 |
ctacaacatgtcaagcattgcggttgtaatcactgctacttaaaatgaagataagtgtaggagagcaaattaagctattggtggacaataaat |
266 |
Q |
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| T |
12447559 |
atgcagtatgtcaagtattgtggttacaatcactgctacatgaaatgaagataggcttaggagaacagattgagatgttggtggacaacaaat |
12447467 |
T |
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