View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_24 (Length: 298)
Name: NF10132_low_24
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 36389398 - 36389148
Alignment:
| Q |
38 |
atagattaccaaatgataaaatttacaaacacttggacaaaataaatataatttctaacctgcaagatattgtaatcaatacctaatagagatggaggag |
137 |
Q |
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| T |
36389398 |
atagattaccaaatgataaaatttacaaacacttggacaaaataaatataatttctaacctgcaagatattgtaatcaatacctaacagagatggaggag |
36389299 |
T |
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| Q |
138 |
gtgtaaacga--aaaaactttcaccggaaataaaaattcttgatccatagtcacttccgtgtagattgtaaaagttagcttgtgcacggaccttgaaact |
235 |
Q |
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| T |
36389298 |
gtgtaaacgagaaaaaacgttcaccggaaataaaaattcatgatccatagtcacttccgtgtagattgtaaaagttagcttgtgcacggaccttgaaact |
36389199 |
T |
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| Q |
236 |
cggtatgaaccacaattttcacacaggtttaatattgccttctattttctc |
286 |
Q |
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| T |
36389198 |
cggtatgaaccacaattttcacacaggtttaatattgccttctattttctc |
36389148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 255
Target Start/End: Original strand, 36391798 - 36392020
Alignment:
| Q |
40 |
agattaccaaatgataaaatttacaaacacttggacaaaataaatataatttctaacctgcaagata-------ttgtaatcaatacctaatagagatgg |
132 |
Q |
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| T |
36391798 |
agattaccaaatgataaaatttacaaacacttagacaaaataaatataatttctaacctgcaagataatcggtattgtaatcaataccgaacagagatgg |
36391897 |
T |
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| Q |
133 |
aggaggtgtaaacgaaaaaactttcaccggaaataaaaattcttgatccatagtcacttccgtgtagattgtaaaagttagcttgtgcacggaccttgaa |
232 |
Q |
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|||||||||||| | |||| |||||| ||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36391898 |
aggaggtgtaaatggaaaagtgttcaccagaaataaaaattcatgatccacaatcacttctgtgtagattgtaaaagttagcttgtgcacggaccttgaa |
36391997 |
T |
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| Q |
233 |
actcggtatgaaccacaattttc |
255 |
Q |
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| T |
36391998 |
actcggtatgaaccacaattttc |
36392020 |
T |
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