View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10132_low_25 (Length: 290)

Name: NF10132_low_25
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10132_low_25
NF10132_low_25
[»] chr4 (2 HSPs)
chr4 (17-290)||(30775053-30775328)
chr4 (61-144)||(35132304-35132387)
[»] chr7 (18 HSPs)
chr7 (33-290)||(8585798-8586057)
chr7 (33-290)||(8616498-8616757)
chr7 (72-216)||(17267797-17267941)
chr7 (30-216)||(8659177-8659365)
chr7 (73-157)||(3147123-3147207)
chr7 (73-216)||(8654309-8654452)
chr7 (17-157)||(27831100-27831242)
chr7 (72-216)||(17260099-17260243)
chr7 (73-216)||(13333622-13333765)
chr7 (70-144)||(1301316-1301390)
chr7 (61-131)||(8664907-8664977)
chr7 (35-120)||(8601793-8601880)
chr7 (181-216)||(8576293-8576328)
chr7 (73-128)||(10494628-10494683)
chr7 (41-144)||(6789337-6789442)
chr7 (22-120)||(8537842-8537942)
chr7 (79-144)||(8646742-8646807)
chr7 (17-98)||(8383160-8383243)
[»] chr2 (9 HSPs)
chr2 (20-290)||(16662084-16662356)
chr2 (29-289)||(16657610-16657872)
chr2 (61-157)||(7542073-7542169)
chr2 (17-157)||(14703209-14703351)
chr2 (17-131)||(43625213-43625329)
chr2 (21-157)||(12234494-12234632)
chr2 (39-157)||(12258806-12258926)
chr2 (17-157)||(11999208-11999350)
chr2 (17-157)||(12245631-12245773)
[»] chr1 (3 HSPs)
chr1 (29-216)||(4678724-4678912)
chr1 (78-116)||(34467051-34467089)
chr1 (61-102)||(52549292-52549333)
[»] chr8 (1 HSPs)
chr8 (18-289)||(43744618-43744891)
[»] chr5 (2 HSPs)
chr5 (73-157)||(28219777-28219861)
chr5 (241-289)||(28219945-28219993)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 30775053 - 30775328
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 114  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||  |||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  30775053 actcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaaacttgacacgagtgatt 30775152  T
Q  115 gatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctca 214  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30775153 gatgaagaaaagtcaatgtcttgaaataaattatctatctcaacaaatgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctca 30775252  T
Q  215 actgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaa 290  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30775253 actgtctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtaattcaa 30775328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 35132304 - 35132387
Alignment:
Q  61 atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 144  Q
    |||||||  |||||||||||   ||| ||||||||||||||| |  || |||||||||||||||| ||||||||||||||||||    
T  35132304 atacactcattaaaaaggtctgcattcatttcctcaaacttggcgcgattgattgatgaagaaaaatcaatgccttgaaataaa 35132387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 8586057 - 8585798
Alignment:
Q  33 gaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaa 130  Q
    ||||| ||||||||||||| |||||| |  |||||||  |||||||||||||||||||||||||||||||||||| | |||||||||||||| || || |    
T  8586057 gaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaaacttgacacgcgtgattgatgaagagaaatcga 8585958  T
Q  131 tgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctct 230  Q
     ||| | | |||||| ||| || |||| | | ||||  || ||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||||    
T  8585957 cgccctcacataaataatcaatttcaatagtagtgaccaatttgaaagaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctct 8585858  T
Q  231 tggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaa 290  Q
    ||| |     ||||| ||||| ||||||||  ||||||||||||| ||||||||||||||    
T  8585857 tgggttcttagtaatatccacattgttctttctcttaaattcctcaacaaagtagttcaa 8585798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 290
Target Start/End: Original strand, 8616498 - 8616757
Alignment:
Q  33 gaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaa 130  Q
    |||||| ||| |||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || || |    
T  8616498 gaatcattaaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcctcaaacttaacacgagtgattgatgaagagaaatcga 8616597  T
Q  131 tgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctct 230  Q
    |||| | | |||||| ||| ||||||| | | ||||  || ||||| || ||  ||| ||| |||||||| ||||||||| ||||| | ||||| | |||    
T  8616598 tgccctcacataaataatcaatctcaatagtagtgaccaatttgaatgaaagcatccgtttcgccttttcgcatgcagttttcaaccgcctcaacgatct 8616697  T
Q  231 tggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaa 290  Q
    ||| |  |  ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||    
T  8616698 tgggttcctagtaatatccacattgttcttcctcttaaaatcctcaacaaagtagttcaa 8616757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 17267797 - 17267941
Alignment:
Q  72 aaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaac 171  Q
    ||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||  || | |||||||   |||| ||||||| | || | | |     
T  17267797 aaaaaggtccatattgatttcctcaaacttggcacgagtgattgacgaagaaaaatcaacacccttaaataaagcgtctacctcaacattggtcacagag 17267896  T
Q  172 ttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 216  Q
      ||| || |||||||||||||| |||||||||||||||||||||    
T  17267897 gcgaaagaaagtgtcctttttgctttttcacatgcagttctcaac 17267941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 8659177 - 8659365
Alignment:
Q  30 tttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagt 127  Q
    ||||||||  |||||||||||| |||||| |  |||||||  |||||||| |||||||| |||||||||||| || || |||||||| ||||| | ||||    
T  8659177 tttgaatcgctaagacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaaacctggcacgagtgattaatgaacagaagt 8659276  T
Q  128 caatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 216  Q
    | || || |||||||||  ||| | ||||||| | |||| |||    || ||||||||||| |||||| | ||||| ||||||||||||    
T  8659277 ctattccctgaaataaagaatcgacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaac 8659365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 3147123 - 3147207
Alignment:
Q  73 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||| | |||||||  || |||||||||  |||||||||||    
T  3147123 aaaagatccatattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaatccctgaaataaagaatctatctcaa 3147207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 8654309 - 8654452
Alignment:
Q  73 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaact 172  Q
    |||| ||||||||| ||||||||||| ||  || |||||||||||||||||||||| || ||   |||||||  ||||| ||||||| | |||| |||      
T  8654309 aaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacctcaacagtggtgacaaaag 8654408  T
Q  173 tgaaggagagtgtcctttttgccttttcacatgcagttctcaac 216  Q
    | || |||||| ||||||||||| | ||||| ||||||||||||    
T  8654409 taaaagagagtatcctttttgccctctcacaggcagttctcaac 8654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 27831242 - 27831100
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 114  Q
    ||||||||||| ||| || ||||| |||||||||| ||||||||  ||||| |  || |||||||||||||||||||||||||||||  || |||||||     
T  27831242 actcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatc 27831143  T
Q  115 gatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
      |||| | ||||||||||| | ||||||   |||||||||||    
T  27831142 attgaaaagaagtcaatgccctcaaataaggcatctatctcaa 27831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 17260099 - 17260243
Alignment:
Q  72 aaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaac 171  Q
    ||||||||||||||||||||| ||||||||| || |||||||||| |||||||| | ||  || | |||||||   |||| ||||||| | || | | |     
T  17260099 aaaaaggtccatattgatttcttcaaacttggcacgagtgattgacgaagaaaaattaacacccttaaataaagcgtctacctcaacattggtcacagag 17260198  T
Q  172 ttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 216  Q
       || || |||||||||||||| |||||||||||||||||||||    
T  17260199 gcaaaagaaagtgtcctttttgctttttcacatgcagttctcaac 17260243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 13333765 - 13333622
Alignment:
Q  73 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaact 172  Q
    |||| ||| ||||| ||||||||||| ||| || |||||||||||||||||||||| || ||   |||||||  |||||  |||||| | |||| |||      
T  13333765 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacttcaacagtggtgacaaaag 13333666  T
Q  173 tgaaggagagtgtcctttttgccttttcacatgcagttctcaac 216  Q
      ||||||||| |||||||| || | ||||| ||||||||||||    
T  13333665 aaaaggagagtatccttttttccctctcacaggcagttctcaac 13333622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 1301316 - 1301390
Alignment:
Q  70 ttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 144  Q
    |||||||| |||||||| ||||||||||||||| || |||||||| ||||| | ||||| || || |||||||||    
T  1301316 ttaaaaagatccatattaatttcctcaaacttggcacgagtgattaatgaacagaagtcgattccctgaaataaa 1301390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 8664907 - 8664977
Alignment:
Q  61 atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaat 131  Q
    ||||||||  ||||||||||||||||||||||||||||| |  || |||| ||||||||| |||| |||||    
T  8664907 atacactttgtaaaaaggtccatattgatttcctcaaacctcgcacgagttattgatgaacaaaattcaat 8664977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 8601793 - 8601880
Alignment:
Q  35 atcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaa 120  Q
    |||| |||||||||| | ||||||||  |||||||| ||||| ||||||| ||||| || |||||||||| |  ||||||||||||||    
T  8601793 atcactaagacaactttcaacagtctctatacacttcttaaagaggtccacattgagttgctcaaacttggcccgagtgattgatgaa 8601880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 8576293 - 8576328
Alignment:
Q  181 agtgtcctttttgccttttcacatgcagttctcaac 216  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8576293 agtgtcctttttgccttttcacaagcagttctcaac 8576328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 10494683 - 10494628
Alignment:
Q  73 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtc 128  Q
    |||| ||| ||||| ||||||||||| ||| || ||||||||||||||||||||||    
T  10494683 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 6789337 - 6789442
Alignment:
Q  41 aagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttga 138  Q
    ||||||||||| ||| ||||  |||||||  |||||||  |||||||||||||||||||||||| |  |||| | |||||||   ||||| ||||| |||    
T  6789337 aagacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctcaaacttggcccgagtaagtgatgaaatgaagtcgatgccctga 6789436  T
Q  139 aataaa 144  Q
    ||||||    
T  6789437 aataaa 6789442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 8537842 - 8537942
Alignment:
Q  22 tgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatga 119  Q
    |||||| ||| | |||| ||| ||||||||||||||| |  |||||||| | ||| |||||||| |||| || |||||||||| |  |||||||||||||    
T  8537842 tgtccatcttagcatcattaaaacaactcttaacagttttcatacacttttcaaagaggtccatgttgagttgctcaaacttggcccgagtgattgatga 8537941  T
Q  120 a 120  Q
    |    
T  8537942 a 8537942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 8646742 - 8646807
Alignment:
Q  79 tccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaa 144  Q
    |||||||||||| | ||||| ||| || ||||||||||||||  |||||||||||| | |||||||    
T  8646742 tccatattgattgcgtcaaatttggcacgagtgattgatgaaataaagtcaatgccattaaataaa 8646807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8383243 - 8383160
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaa 98  Q
    |||||||| || ||| | |||||||||||| |||| ||||||||  |||||||| | ||| ||||||||||||| || ||||||    
T  8383243 actcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtccatattgagttgctcaaa 8383160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 16662356 - 16662084
Alignment:
Q  20 cttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgat 117  Q
    |||||||| |||||||||   || |||||||| |||| |||  ||||||| |||||||||| ||||||||||||| |||||||||||| |||||| ||||    
T  16662356 cttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggcccatattgatttcttcaaacttgacacgagtgagtgat 16662257  T
Q  118 gaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaact 217  Q
    | ||| ||||||||| | |   |||||| ||| ||||||| |   ||||  || ||||| |||||||||||||| ||||||||||| | ||||||||||     
T  16662256 gtagagaagtcaatgtcctcgtataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacc 16662157  T
Q  218 gtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttcaa 290  Q
      ||||| ||||||||||  |  || || ||||| ||||||||| | |||||||| |  ||||||||||||||    
T  16662156 tcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaattctttcacaaagtagttcaa 16662084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 289
Target Start/End: Complemental strand, 16657872 - 16657610
Alignment:
Q  29 ctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaag 126  Q
    ||||||||||  ||||||| ||| |||||| |  |||||||  || ||||| |||||||| ||||||||||||||| || | ||||||||||||||||||    
T  16657872 ctttgaatcacgaagacaattctcaacagttttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaaaag 16657773  T
Q  127 tcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaag 226  Q
    ||||| || |||||||||  ||||| ||||||| | |||| |||    || ||||||||||| |||||| | ||||||||||||||||||   ||||| |    
T  16657772 tcaattccctgaaataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaagg 16657673  T
Q  227 ctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttca 289  Q
    ||||||  |  |   | |||||||| || |||||| | | ||| |||||||||||||||||||    
T  16657672 ctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaaagtagttca 16657610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 7542073 - 7542169
Alignment:
Q  61 atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||||| ||||||||| |||||||| || |||||||||||| |   | |||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  7542073 atacactcgttaaaaagatccatattcatctcctcaaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaa 7542169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 14703209 - 14703351
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 114  Q
    ||||||||||| ||| | |||| |||||||||||| |||| |||  | |||||  ||||||| ||||||||| ||||| ||||||||| |   | ||||     
T  14703209 actcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaaacttggccctattgatc 14703308  T
Q  115 gatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||||||||||||||||| ||||||||||  ||||| |||||    
T  14703309 gatgaagaaaagtcaatgcattgaaataaagcatctacctcaa 14703351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 43625213 - 43625329
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 114  Q
    ||||||||||| ||| | |||| ||||||||||||||||||| |  | ||||| ||| ||||| |||||||| ||||| ||||| ||| || ||||||||    
T  43625213 actcttgtccaacttggcatcaataagacaactcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgatt 43625312  T
Q  115 gatgaagaaaagtcaat 131  Q
    |||||| | ||||||||    
T  43625313 gatgaaaagaagtcaat 43625329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 12234494 - 12234632
Alignment:
Q  21 ttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatg 118  Q
    ||||||| ||| | |||| |||||||||||| |||| |||  |||||||   ||| ||| |||||||| ||||||||||||||| |   | |||| ||||    
T  12234494 ttgtccatcttagcatcactaagacaactctcaacaatcttcatacactcaataagaagatccatattcatttcctcaaacttggccctattgatcgatg 12234593  T
Q  119 aagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||||| |||||||||| |||||||  ||||| |||||    
T  12234594 aagaaaaatcaatgccttcaaataaagaatctacctcaa 12234632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 12258926 - 12258806
Alignment:
Q  39 gtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgcctt 136  Q
    ||||||||||||| ||||||||  || || |  || ||||| |||| ||| ||||||||||||||| || || ||||||||| |||||| |||||||| |    
T  12258926 gtaagacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaaacttggcacgattgattgatgcagaaaaatcaatgccat 12258827  T
Q  137 gaaataaattatctatctcaa 157  Q
     | |||||  |||||||||||    
T  12258826 cacataaagaatctatctcaa 12258806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 11999208 - 11999350
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 114  Q
    ||||||||||| ||||| |||  ||| |||||||| ||||||||  ||||| |  |||| ||| || | ||| | ||||||||||||  |  || ||||     
T  11999208 actcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaaactttgcccgattgatg 11999307  T
Q  115 gatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||||||||| ||||||||||||||||||  ||||| |||||    
T  11999308 gatgaagaaaaatcaatgccttgaaataaagaatctacctcaa 11999350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 12245773 - 12245631
Alignment:
Q  17 actcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgatt 114  Q
    ||||||||||| ||||| |||  ||| |||||||| ||||||||  ||||| |  |||| ||| || | ||| | ||||||||||||  |  || ||||     
T  12245773 actcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaaactttgcccgattgatg 12245674  T
Q  115 gatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||||||||| ||||||||||||||||||  ||||| |||||    
T  12245673 gatgaagaaaaatcaatgccttgaaataaagaatctacctcaa 12245631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 4678912 - 4678724
Alignment:
Q  29 ctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaag 126  Q
    |||||||||| ||||||||||||||||||| |  ||||||| ||| |||||||||||||| ||||||||||||||| || |||| || ||||||||||||    
T  4678912 ctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaaag 4678813  T
Q  127 tcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 216  Q
    || || || |||||||||  ||||| ||||||| | |||| |||   ||| ||||||||||| |||||| | || || ||||||||||||    
T  4678812 tctattccctgaaataaagaatcta-ctcaacagtggtgacaaaggcgaaagagagtgtcctctttgccctctcgcaggcagttctcaac 4678724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 34467089 - 34467051
Alignment:
Q  78 gtccatattgatttcctcaaacttgacatgagtgattga 116  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  34467089 gtccatattgatttcctcaaacttggcacgagtgattga 34467051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 52549333 - 52549292
Alignment:
Q  61 atacacttgttaaaaaggtccatattgatttcctcaaacttg 102  Q
    |||||||  ||||||||||||||||| |||||||||||||||    
T  52549333 atacactccttaaaaaggtccatattcatttcctcaaacttg 52549292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 43744618 - 43744891
Alignment:
Q  18 ctcttgtccacctttgaatcagtaagacaactcttaacagtct--atacacttgttaaaaaggtccatattgatttcctcaaacttgacatgagtgattg 115  Q
    |||||||||| ||| | ||||||||||||||||| |||| | |  | ||||| ||| || || |||||||||||||||||||||||   | |||||||||    
T  43744618 ctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagtacgagtgattg 43744717  T
Q  116 atgaagaaaagtcaatgccttgaaataaattatctatctcaacaattgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaa 215  Q
     || | | || |||||||| | |||||||  ||||| ||||| | | |||| ||     || || | ||||||||||||  |||| ||||| ||||||||    
T  43744718 ttgtaaagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagataatgtcctttttgctctttcgcatgctgttctcaa 43744817  T
Q  216 ctgtctcaaagctcttggatcgcgggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttca 289  Q
    |   || || |||||||| |  |  ||||||||||| ||||||||| ||||||| |||||| | ||||||||||    
T  43744818 cctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttca 43744891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 28219777 - 28219861
Alignment:
Q  73 aaaaggtccatattgatttcctcaaacttgacatgagtgattgatgaagaaaagtcaatgccttgaaataaattatctatctcaa 157  Q
    ||||| |||||||||||||||||||||||  || |||| ||||||||| | || |||||||||| |||||||  ||||| |||||    
T  28219777 aaaagatccatattgatttcctcaaacttagcacgagtaattgatgaaaagaaatcaatgccttcaaataaagaatctacctcaa 28219861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 28219945 - 28219993
Alignment:
Q  241 gtaatgtccacgttgttcttcgtcttaaattcctctacaaagtagttca 289  Q
    ||||||||||| ||||||||| ||||||| |||||| | ||||||||||    
T  28219945 gtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttca 28219993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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