View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_26 (Length: 290)
Name: NF10132_low_26
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 40093170 - 40092895
Alignment:
| Q |
1 |
tctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaa |
100 |
Q |
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| T |
40093170 |
tctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaa |
40093071 |
T |
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| Q |
101 |
agttattatttaataattcaagaacttaattgaaacaataaattatgaacatttttaaaaggaacatccatcatcaactctccctccnnnnnnnnnnnnn |
200 |
Q |
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| T |
40093070 |
agttattatttaataattcaagaacttaattgaaaaaataaattatgaacatttttagaaggaacatccatcatcaactctccct-aaaaaaaataaaaa |
40092972 |
T |
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| Q |
201 |
nnnnnntcaacgatcaactcatgttttaacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagg |
277 |
Q |
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| T |
40092971 |
aaaaaatcaatgatcaactcatgttttaacttgttttaaaatcaacctcgacttcatttgagtttcaataacacagg |
40092895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 40062495 - 40062329
Alignment:
| Q |
19 |
tgatcgggatgtcctcattaagcttaggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataatt |
118 |
Q |
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| T |
40062495 |
tgattgggatgtccacattaagcttaggtttgtctttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataatt |
40062396 |
T |
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| Q |
119 |
caagaacttaattgaaacaataaattatgaacatttttaaaaggaacatccatcatcaactctccct |
185 |
Q |
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| T |
40062395 |
caagaacttaatggaaacaataaattatgaacatttttggacggaacatccaagatcaactctccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 40062311 - 40062245
Alignment:
| Q |
212 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagg |
277 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacagg |
40062245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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