View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_27 (Length: 278)
Name: NF10132_low_27
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33916329 - 33916064
Alignment:
| Q |
1 |
ttgaggcggaattcggcctgagatctggttttctgataagtctaacatactaagtgaacgtaaccgacaaattgcatcaggtatttctccagatagttga |
100 |
Q |
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| T |
33916329 |
ttgaggcggaattcggcctgagatctggttttctgataagtctaacatactaagtgaacgtaaccgacaaattgcatcaggtatttctccagatagttga |
33916230 |
T |
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| Q |
101 |
ttgtggctcaagtttaatgttactagagacttccatgatgttatatccgatggaatttgaccggtgagctggttctgatcgagtagaagagtttctaact |
200 |
Q |
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| T |
33916229 |
ttgtggctcaagtttaatgttactagagacttccatgatgttatatccgatggaatttgaccggtgagctggttctgatcgagtagaagagtttctaacc |
33916130 |
T |
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| Q |
201 |
gaggaagagatgttaactctaatggaatacttccattgaaaaagtcgttactagcattgaacttca |
266 |
Q |
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| T |
33916129 |
gaggaagagatgttaactctaatggaatacttccattgaaaaagttgttactagcattgaacttca |
33916064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 24792117 - 24792284
Alignment:
| Q |
70 |
aattgcatcaggtatttctccagatagttgattgtggctcaagtttaatgttactagagacttccatgatgttatatccgatggaatttgaccggtgagc |
169 |
Q |
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||||||||| || |||| |||||| ||||| || |||||||| || | ||||||| |||||||||||| ||||||| |||||||||||||| |||| | |
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| T |
24792117 |
aattgcatctggaatttgtccagaaagttggttctggctcaaattaagagttactaaggacttccatgatattatatcagatggaatttgaccagtgaac |
24792216 |
T |
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| Q |
170 |
tggttctgatcgagtagaagagtttctaactgaggaagagatgttaactctaatggaatacttccatt |
237 |
Q |
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| T |
24792217 |
tgattctgatcaagcaaaagagttgttaattttggaagtgatgttaactcttgtggaatacttccatt |
24792284 |
T |
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