View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_28 (Length: 268)
Name: NF10132_low_28
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 48208101 - 48207951
Alignment:
| Q |
12 |
atgaacaaaaataaatttaaagtagtaagatgaaacattgagtaagatatagtggttaaaattaagaattcaaaattgagtataa-aaaattgagcgtgt |
110 |
Q |
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| T |
48208101 |
atgaacaaaaataaatttaaagtagtaagatgaaacattgagtaagatatagtggttaaaattaagaattcaaaattgagtataaaaaaattgagtgtgt |
48208002 |
T |
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| Q |
111 |
ctataaattattttttggaaaattctacgaggttcaacatgtgtgtcaaaa |
161 |
Q |
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| T |
48208001 |
ctataaattattttttgaaaaattctacgaggttcaacatgtgtgtcaaaa |
48207951 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 47656579 - 47656504
Alignment:
| Q |
193 |
gcacgaaccgacacgaacaagctttcaatacacctgtgcgtacacgtctctaggccagcaccttcataaaagccgc |
268 |
Q |
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| T |
47656579 |
gcacgaacccacacgaacaagctttcaacacatctgtgcttacacgtctcttgaccagcaccttcataaaagccgc |
47656504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 54923016 - 54922957
Alignment:
| Q |
204 |
cacgaacaagctttcaatacacctgtgcgtacacgtctctaggccagcaccttcataaaag |
264 |
Q |
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| T |
54923016 |
cacgaacaagctt-caacacatctgtgcgtacacgtctcttggctagcaccgtcataaaag |
54922957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 11441783 - 11441893
Alignment:
| Q |
158 |
aaaagagcgttgctatatcacacgatnnnnnnnccgcacgaaccgacacgaacaagctttcaatacacctgtgcgtacacgtctctaggccagcaccttc |
257 |
Q |
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| T |
11441783 |
aaaagagcgttgctatatcgcacgataaaaaaaccgcacgaacccacacgaacaagctttcaacacatctgtgtttacacgtctcttggccagcaccttc |
11441882 |
T |
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| Q |
258 |
ataaaagccgc |
268 |
Q |
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| T |
11441883 |
ataaaagccgc |
11441893 |
T |
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