View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10132_low_33 (Length: 249)

Name: NF10132_low_33
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10132_low_33
NF10132_low_33
[»] chr6 (1 HSPs)
chr6 (1-234)||(29944927-29945160)
[»] chr2 (2 HSPs)
chr2 (1-234)||(10784059-10784292)
chr2 (1-41)||(15592942-15592982)
[»] scaffold0025 (2 HSPs)
scaffold0025 (141-234)||(61328-61421)
scaffold0025 (1-53)||(61442-61494)
[»] chr3 (4 HSPs)
chr3 (136-234)||(42968805-42968903)
chr3 (2-90)||(6582139-6582227)
chr3 (22-89)||(42968676-42968743)
chr3 (13-45)||(602002-602034)
[»] chr8 (2 HSPs)
chr8 (170-234)||(7851998-7852062)
chr8 (4-86)||(7852161-7852243)
[»] chr7 (3 HSPs)
chr7 (1-41)||(11848076-11848116)
chr7 (170-234)||(46433705-46433769)
chr7 (13-45)||(46433909-46433941)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 29945160 - 29944927
Alignment:
Q  1 attgatgagttgcaaagtagtcttcttgttcatgaacaaagaatggaatctcagcttgttaaagaggaagaacaagcattgaaggtctctggaagaggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29945160 attgatgagttgcaaagtagtcttcttgttcatgaacaaagaatggaatctcagcttgttaaagaggaagaataagcattgaaggtctctggaagaggta 29945061  T
Q  101 atgggcgtggaagaggtgcaagaactggattcagaggtcgtggaaggggaagacaagggaaagaatatgttgaatgcttcaaatgtcacaaactaggtca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29945060 atgggcgtggaagaggtgcaagaactggattcagaggtcgtggaaggggaagacaagggaaagaatatgttgaatgcttcgaatgtcacaaactaggtca 29944961  T
Q  201 ttatcagagtgaatgtcccagttgggaagaaaat 234  Q
    ||| |||||||||| ||||||||||| |||||||    
T  29944960 ttaccagagtgaatatcccagttggggagaaaat 29944927  T

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Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10784292 - 10784059
Alignment:
Q  1 attgatgagttgcaaagtagtcttcttgttcatgaacaaagaatggaatctcagcttgttaaagaggaagaacaagcattgaaggtctctggaagaggta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  10784292 attgatgagttgcagagtagtcttcttgttcatgaacaaagaatgggatctcaacttgttaaagaggaagaacaagcattgaaggtatctggaagaggta 10784193  T
Q  101 atgggcgtggaagaggtgcaagaactggattcagaggtcgtggaaggggaagacaagggaaagaatatgttgaatgcttcaaatgtcacaaactaggtca 200  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||||| | || ||    
T  10784192 atgggcgtggtagaggtgcaagaactggatttagaggtcatggaagaggaagacaaggtaaagaatttgttgaatgcttcaaatgtcacaaattgggcca 10784093  T
Q  201 ttatcagagtgaatgtcccagttgggaagaaaat 234  Q
    |||||||||||||||||||||||||| |||||||    
T  10784092 ttatcagagtgaatgtcccagttggggagaaaat 10784059  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15592942 - 15592982
Alignment:
Q  1 attgatgagttgcaaagtagtcttcttgttcatgaacaaag 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15592942 attgatgagttgcaaagtagtcttcttgttcatgaacaaag 15592982  T

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Target: scaffold0025 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 61421 - 61328
Alignment:
Q  141 tggaaggggaagacaagggaaagaatatgttgaatgcttcaaatgtcacaaactaggtcattatcagagtgaatgtcccagttgggaagaaaat 234  Q
    |||||| ||||||||||| || || | | ||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||| |||||||    
T  61421 tggaagaggaagacaaggcaaggagtttattgaatgcttcaaatgtcacaaattaggtcattatgaaagtgaatgtcctagttggggagaaaat 61328  T

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Target: scaffold0025; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 61494 - 61442
Alignment:
Q  1 attgatgagttgcaaagtagtcttcttgttcatgaacaaagaatggaatctca 53  Q
    |||||||||||||| || ||||||||||||||||| ||||||||| |||||||    
T  61494 attgatgagttgcagagcagtcttcttgttcatgagcaaagaatgcaatctca 61442  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 42968805 - 42968903
Alignment:
Q  136 ggtcgtggaaggggaagacaagggaaagaatatgttgaatgcttcaaatgtcacaaactaggtcattatcagagtgaatgtcccagttgggaagaaaat 234  Q
    ||||||||||| ||||| ||| | ||||||  |||||||||||||||||| || ||| | |||||| |||||| ||||||||| |||||||||||||||    
T  42968805 ggtcgtggaagaggaaggcaaagcaaagaacttgttgaatgcttcaaatgccataaattgggtcatcatcagaatgaatgtccaagttgggaagaaaat 42968903  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 6582227 - 6582139
Alignment:
Q  2 ttgatgagttgcaaagtagtcttcttgttcatgaacaaagaatggaatctcagcttgttaaagaggaagaacaagcattgaaggtctct 90  Q
    |||||||||| ||||| ||||||||||||||||||||||||||| |  |||| | |   ||||| ||||||||||||||||| ||||||    
T  6582227 ttgatgagttacaaagcagtcttcttgttcatgaacaaagaatgcatgctcaacattcaaaagaagaagaacaagcattgaaagtctct 6582139  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 42968676 - 42968743
Alignment:
Q  22 cttcttgttcatgaacaaagaatggaatctcagcttgttaaagaggaagaacaagcattgaaggtctc 89  Q
    |||||||||||||||||||||||| ||| ||| | || |||||  |||||||||||| |||| |||||    
T  42968676 cttcttgttcatgaacaaagaatgcaatatcaacatgataaagcagaagaacaagcactgaaagtctc 42968743  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 602002 - 602034
Alignment:
Q  13 caaagtagtcttcttgttcatgaacaaagaatg 45  Q
    ||||||||||||||||| |||||||||||||||    
T  602002 caaagtagtcttcttgtccatgaacaaagaatg 602034  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 7852062 - 7851998
Alignment:
Q  170 ttgaatgcttcaaatgtcacaaactaggtcattatcagagtgaatgtcccagttgggaagaaaat 234  Q
    ||||||||||||| ||||||||||| || |||||||||||||| ||||||| |||||| ||||||    
T  7852062 ttgaatgcttcaagtgtcacaaacttggccattatcagagtgagtgtcccacttgggaggaaaat 7851998  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 7852243 - 7852161
Alignment:
Q  4 gatgagttgcaaagtagtcttcttgttcatgaacaaagaatggaatctcagcttgttaaagaggaagaacaagcattgaaggt 86  Q
    |||||| | ||||| ||||||||||||||||||||||||||| ||  ||| |   | || || ||||||||||||||||||||    
T  7852243 gatgagctacaaagcagtcttcttgttcatgaacaaagaatgcaagttcaacacttgaaggaagaagaacaagcattgaaggt 7852161  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11848076 - 11848116
Alignment:
Q  1 attgatgagttgcaaagtagtcttcttgttcatgaacaaag 41  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11848076 attgatgagttgcaaagtagtcttcttgttcatgaataaag 11848116  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 46433769 - 46433705
Alignment:
Q  170 ttgaatgcttcaaatgtcacaaactaggtcattatcagagtgaatgtcccagttgggaagaaaat 234  Q
    ||||||||||||| || || ||||| ||||||||||||||||  ||||||| |||||||||||||    
T  46433769 ttgaatgcttcaagtgccataaacttggtcattatcagagtgggtgtcccacttgggaagaaaat 46433705  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 46433941 - 46433909
Alignment:
Q  13 caaagtagtcttcttgttcatgaacaaagaatg 45  Q
    |||||||||||||||||||||||||||||||||    
T  46433941 caaagtagtcttcttgttcatgaacaaagaatg 46433909  T

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