View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10132_low_34 (Length: 249)
Name: NF10132_low_34
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 15445191 - 15444970
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15445191 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggtcatggaggcatgcttacttcaattttctttatgatgtcaaagactggttt |
15445092 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaatgtgttagtttattttatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
15445091 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttattgttttagtttattttatcaa |
15444992 |
T |
|
| Q |
218 |
catcgcatgttttccccctttg |
239 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
15444991 |
catcgcatgttttccccctttg |
15444970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 15312296 - 15312076
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||||||||| |
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|
| T |
15312296 |
atttgcaacaggcttctgggtagtttttggttctcttttattcaagaggtcatggagacatgcttacttcaatttcctttatgatgtgaaagactggttt |
15312197 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaatgtgttagtttattttatcaa |
217 |
Q |
| |
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|| |||| || | | | |||| || | ||||||||||| ||||||||||||||||||||| ||||| | ||||||| ||||||| ||||| |||||||| |
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| T |
15312196 |
atgtcaaaatagtcataaagtgcactatttcacttgaatcttttcaatatggtaagcaaatccagtattgtaatttttatgtgttcgttta-tttatcaa |
15312098 |
T |
|
| Q |
218 |
catcgcatgttttccccctttg |
239 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
15312097 |
catcgcatgttttccctctttg |
15312076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 15492665 - 15492445
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||||||||| |
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|
| T |
15492665 |
atttgcaacaggcttctgggtagtttttggttctcttttattcaagaggtcatggagacatgcttacttcaatttcctttatgatgtgaaagactggttt |
15492566 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaatgtgttagtttattttatcaa |
217 |
Q |
| |
|
|| |||| || | | | |||| || | ||||||||||| ||||||||||||||||||||| ||||| | ||||||| ||||||| ||||| |||||||| |
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|
| T |
15492565 |
atgtcaaaatagtcataaagtgcactatttcacttgaatcttttcaatatggtaagcaaatccagtattgtaatttttatgtgttcgttta-tttatcaa |
15492467 |
T |
|
| Q |
218 |
catcgcatgttttccccctttg |
239 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
15492466 |
catcgcatgttttccctctttg |
15492445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 15301443 - 15301260
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15301443 |
attttcaacatgcttctggatagtttttggtacccttttatttaagaggacatggaggcatgcttacttcaattttctttatgatgtcaaagactggttt |
15301344 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaatgtgtt |
202 |
Q |
| |
|
|| |||||||||||||||||| || | ||||||||||||| ||||||| |||||||||||| ||||||||| |||| ||||||| |
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|
| T |
15301343 |
atgtcaagatggacctgaagtgcactatttcacttgaaac-tttcaatgtggtaagcaaaagaagtttattagttttgatgtgtt |
15301260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 15481812 - 15481629
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15481812 |
attttcaacatgcttctggatagtttttggtacccttttatttaagaggacatggaggcatgcttacttcaattttctttatgatgtcaaagactggttt |
15481713 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaatgtgtt |
202 |
Q |
| |
|
|| |||||||||||||||||| || | ||||||||||||| ||||||| |||||||||||| ||||||||| |||| ||||||| |
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|
| T |
15481712 |
atgtcaagatggacctgaagtgcactatttcacttgaaac-tttcaatgtggtaagcaaaagaagtttattagttttgatgtgtt |
15481629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 15282922 - 15282712
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
15282922 |
atttacaacaggcttctggatagtttttggtacccttttatttaagaggacatggaggcatgcttacttcaattttctttatgatgtgaaagactggttt |
15282823 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaa--tgtgttagtttattttatc |
215 |
Q |
| |
|
|| ||||||||||| ||||||||| | | |||||||||| | |||||| |||||||||| | |||||||||| ||| | ||| |||||||| |||||| |
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|
| T |
15282822 |
atgtcaagatggacttgaagtacactttgtcacttgaaa-tcttcaatgtggtaagcaatagaagtttattaactttgacgtgttttagttta-tttatc |
15282725 |
T |
|
| Q |
216 |
aacatcgcatgtt |
228 |
Q |
| |
|
||||| ||||||| |
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|
| T |
15282724 |
aacatagcatgtt |
15282712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 15463291 - 15463081
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
15463291 |
atttacaacaggcttctggatagtttttggtacccttttatttaagaggacatggaggcatgcttacttcaattttctttatgatgtgaaagactggttt |
15463192 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaattttaa--tgtgttagtttattttatc |
215 |
Q |
| |
|
|| ||||||||||| ||||||||| | | |||||||||| | |||||| |||||||||| | |||||||||| ||| | ||| |||||||| |||||| |
|
|
| T |
15463191 |
atgtcaagatggacttgaagtacactttgtcacttgaaa-tcttcaatgtggtaagcaatagaagtttattaactttgacgtgttttagttta-tttatc |
15463094 |
T |
|
| Q |
216 |
aacatcgcatgtt |
228 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
15463093 |
aacatagcatgtt |
15463081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 15114364 - 15114495
Alignment:
| Q |
29 |
gcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggtttatatcaagatg |
128 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
15114364 |
gcttttggattgtttttggttctcttttactcaagaggacatggaggcatgcttacttcaattttctttatgatgtcaaagattggcttatgtcaagatg |
15114463 |
T |
|
| Q |
129 |
gacctgaagtacattgtttcacttgaaacttt |
160 |
Q |
| |
|
|| ||||||| |||| |||||||||||||||| |
|
|
| T |
15114464 |
gaactgaagtgcattctttcacttgaaacttt |
15114495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 15280304 - 15280133
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||||| |||||| | |||||||| |||||||||| | |
|
|
| T |
15280304 |
atttgcaacaggcttct----agtttttggttctcttttattcaacaggtcatggaagcatgcttacttcaattttttatatgatgtgaaagactggtat |
15280209 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaatttt |
194 |
Q |
| |
|
|| |||||||||| ||||||| | | ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15280208 |
atgtcaagatggaactgaagtgc-ctatttcagttgaaacttttcaatatggtaagcaaatacagtttattaatttt |
15280133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 15460673 - 15460502
Alignment:
| Q |
18 |
atttgcaacaggcttctggatagtttttggttctcttttattcaagaggacatggaggcatgcttacttgaattttctttatgatgtcaaagactggttt |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||||| |||||| | |||||||| |||||||||| | |
|
|
| T |
15460673 |
atttgcaacaggcttct----agtttttggttctcttttattcaacaggtcatggaagcatgcttacttcaattttttatatgatgtgaaagactggtat |
15460578 |
T |
|
| Q |
118 |
atatcaagatggacctgaagtacattgtttcacttgaaacttttcaatatggtaagcaaaaccagtttattaatttt |
194 |
Q |
| |
|
|| |||||||||| ||||||| | | ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15460577 |
atgtcaagatggaactgaagtgc-ctatttcagttgaaacttttcaatatggtaagcaaatacagtttattaatttt |
15460502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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