View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_36 (Length: 237)
Name: NF10132_low_36
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13271672 - 13271880
Alignment:
| Q |
1 |
ttcaacgcctaaatcggtcttctcgttaaaatcattcccagcaatagtatctagaaaattaatagttcgaaaattaatgttgacacaatagtgtatgttt |
100 |
Q |
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| T |
13271672 |
ttcaacgcctaaatcggtcttcttgttaaaatcattcccagcaatagtatctagaaaattaata---------------ttgacacaatagtgtttgttt |
13271756 |
T |
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| Q |
101 |
gtctacannnnnnncaaattttatcgacatttatgacaccaattatttttaactaacttcataaagagttacagattgtaatttatacatatcaatatca |
200 |
Q |
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| T |
13271757 |
gtctacatttttttcaaattttctcgacttttatgacaccaattatttttaactaccttcataaagagttacagattgtaatttatacatatcaatatca |
13271856 |
T |
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| Q |
201 |
atcatcaaaaactatgaataaact |
224 |
Q |
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| T |
13271857 |
atcatcaaaaactatgagtaaact |
13271880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 13267703 - 13267762
Alignment:
| Q |
117 |
aattttatcgacatttatgacaccaattatttttaactaacttcataaagagttacagat |
176 |
Q |
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| T |
13267703 |
aattttctcgacatttatgacaccaattattgtttaataccttcataaatagttagagat |
13267762 |
T |
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