View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_37 (Length: 236)
Name: NF10132_low_37
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_37 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 10376521 - 10376739
Alignment:
| Q |
1 |
acctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtagataatagtatggaattttgatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10376521 |
acctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtagataatagtatggaattttgatgga |
10376620 |
T |
|
| Q |
101 |
aattaagagctatgaaagatttagggatagcagtaaggagcaaagactcaaagaagactcgcttgtgagtgaatggataacattaacagtgctgtttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10376621 |
aattaagagctatgaaagatttagggatagcagtaaggagcaaagactcaaagaagactcgcttgtgagtgaatggataacactaacagtgctgtttttg |
10376720 |
T |
|
| Q |
201 |
aatggttggaagtgcatat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
10376721 |
aatggttggaagtgcatat |
10376739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 10364475 - 10364691
Alignment:
| Q |
2 |
cctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtagataatagtatggaattttgatggaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
10364475 |
cctcctatcatagttgcagccatcttctgttgatattgttaaagcaaaccagcaactaaggtatgaaacttgtagataatagtatggaattttgatggaa |
10364574 |
T |
|
| Q |
102 |
attaagagctatgaaagatttagggatagcagtaaggagcaaagactcaaagaagactcgcttgtgagtgaatggataacattaacagtgctgtttttga |
201 |
Q |
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| T |
10364575 |
attaagagctatg-aagattaagggataacagtaagtagcaaagactcaaagaagacttgcttgtgaatgaatggataacactaacagtgctgtttttga |
10364673 |
T |
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| Q |
202 |
atggttggaagtgcatat |
219 |
Q |
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|||||||||||||||||| |
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| T |
10364674 |
atggttggaagtgcatat |
10364691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10076659 - 10076429
Alignment:
| Q |
1 |
acctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtagataatagtatggaattttgatgga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
10076659 |
acctcctatcatagttgcagccatcttcagttgatcttattaaagcaaaccagcaactaaggtatggaacttgtagaaaatagtatggaattttgatgga |
10076560 |
T |
|
| Q |
101 |
aattaagagctatgaaagatttagggatagca------gtaaggagc-----aaagactcaaagaagactcgcttgtgagtgaatggataacattaacag |
189 |
Q |
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|| ||||||||||| |||||| |||||||| | ||| ||| | ||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
10076559 |
aagtaagagctatg-aagattaagggatagaaactatggtatggatcttgttaaagactcaaagaagactcgcttgtgaatgaatggataacactaacag |
10076461 |
T |
|
| Q |
190 |
tgctgtttttgaatggttggaagtgcatattg |
221 |
Q |
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| T |
10076460 |
cgctgtttttgagtggttggaagtgcatattg |
10076429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 10434721 - 10434831
Alignment:
| Q |
2 |
cctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtagataatagtatggaattttgatggaa |
101 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||| |
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| T |
10434721 |
cctcctatcatagttgcagccatcttctaatgatattgttaaagcaaaccagcaacaaaggtatggaagttgtagataatag--ttgaattttgatggaa |
10434818 |
T |
|
| Q |
102 |
attaagagctatg |
114 |
Q |
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||||||||||||| |
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| T |
10434819 |
attaagagctatg |
10434831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 9838253 - 9838202
Alignment:
| Q |
2 |
cctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag |
53 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9838253 |
cctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag |
9838202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 9849131 - 9849080
Alignment:
| Q |
2 |
cctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag |
53 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9849131 |
cctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag |
9849080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 10505177 - 10505144
Alignment:
| Q |
2 |
cctcctatcatagttgcagccatcttctgttgat |
35 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
10505177 |
cctcctatcatagttgcagccatcttctgttgat |
10505144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 11768626 - 11768574
Alignment:
| Q |
2 |
cctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagc |
54 |
Q |
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||||||||||||||||| ||||||||| ||||||||||| | | ||||||||| |
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| T |
11768626 |
cctcctatcatagttgccgccatcttcagttgatcttgttagaccaaatcagc |
11768574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10579994 - 10579940
Alignment:
| Q |
1 |
acctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaa |
56 |
Q |
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|||||| |||||||||||||||||||| ||||||| |||| |||||||| |||||| |
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| T |
10579994 |
acctccaatcatagttgcagccatcttgtgttgat-ttgttaaagcaaagcagcaa |
10579940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 10194989 - 10194961
Alignment:
| Q |
88 |
gaattttgatggaaattaagagctatgaa |
116 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10194989 |
gaattttgatggaaattaagagctatgaa |
10194961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 50561 - 50642
Alignment:
| Q |
138 |
gagcaaagactcaaagaagactcgcttgtgagtgaatggataacattaacagtgctgtttttgaatggttggaagtgcatat |
219 |
Q |
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| T |
50561 |
gagcaatgactcaaagaagactcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgcatat |
50642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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