View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_4 (Length: 509)
Name: NF10132_low_4
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 28731702 - 28732070
Alignment:
| Q |
12 |
gcagagaggaaaaggttgaatagttttccatgacagtgaagaagatttcaagtctcaagagagtgaattcgagtgtgaaatgaagggaatgatgatgaaa |
111 |
Q |
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| T |
28731702 |
gcagagaggaaaaggttgaagagttttccatggcggtgaagaagatttcaagtctcaagagagtgaattcgagtgtgaaatgaatggaatgatgatgaaa |
28731801 |
T |
|
| Q |
112 |
tgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttctagattta |
211 |
Q |
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| T |
28731802 |
tgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgttagtttgttacgcggttgttctagattta |
28731901 |
T |
|
| Q |
212 |
aacgatttcgaatgtaagcgtgtgaatgaagc----ttttttttatggnnnnnnnttaagctc---nnnnnnnnnnnacaatggaaataattaagctctt |
304 |
Q |
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| T |
28731902 |
aacgatttcgaatgtaagcgtgcgaatgaagcttttttttttttatggaaaaaaattaagctcttttttttttttttacaatggaaataattaagctctt |
28732001 |
T |
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| Q |
305 |
aagtaccctatattttttattcatatattaatactattttttcctccatgtgtcaatgaaggtacctaa |
373 |
Q |
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| T |
28732002 |
aagtaccctatatattttattcatatattaatactgtttttttctccatgtgtcaatgaaggtacctaa |
28732070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 493
Target Start/End: Original strand, 28732619 - 28732666
Alignment:
| Q |
446 |
aatttatacgttgtctatatttttactcatatatgaatgcaagtagct |
493 |
Q |
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| T |
28732619 |
aatttatacattgtctatatttttactcatatatgaatgcaagtagct |
28732666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 38122181 - 38122348
Alignment:
| Q |
57 |
tttcaagtctcaagagagtgaattcgagtgtgaaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacg |
156 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38122181 |
tttcaagtctcaagagagtgaattcgagtgtgaattgaatcgaatgaagatgaattgcagggtgaagtatttatatacgcgcgcgcggggaaattaaacg |
38122280 |
T |
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| Q |
157 |
gttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttctagatttaaacgatttcgaat |
224 |
Q |
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| T |
38122281 |
gttagaagagagtattgtaagcgtgtgagtttgttacgcggttgttatagatttaaacgtttttgaat |
38122348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 38607903 - 38607792
Alignment:
| Q |
89 |
aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt |
188 |
Q |
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||||||| |||| || |||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||| ||||||||||| |
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| T |
38607903 |
aaatgaatggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttag-agaga-ttttgtaatcgtgtgagttt |
38607806 |
T |
|
| Q |
189 |
gttacgcggttgtt |
202 |
Q |
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| T |
38607805 |
gttacgcggttgtt |
38607792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 38792686 - 38792575
Alignment:
| Q |
89 |
aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt |
188 |
Q |
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||||||| |||| || |||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||| ||||||||||| |
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| T |
38792686 |
aaatgaatggaacgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcgggggagtgaaactgttag-agaga-ttttgtaatcgtgtgagttt |
38792589 |
T |
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| Q |
189 |
gttacgcggttgtt |
202 |
Q |
| |
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|||||||||||||| |
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| T |
38792588 |
gttacgcggttgtt |
38792575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 38607287 - 38607185
Alignment:
| Q |
89 |
aaatgaagggaatgatgatgaaatgcagggtgaagtatttatatacgcgcgcgcggggaaatgaaacggttagaagagagtattgtaagcgtgtgagttt |
188 |
Q |
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||||||| ||||||| |||||||||||| |||||||| |||||||||||||||| | | ||||| |||||| ||| | |||||||||||||||||||| |
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| T |
38607287 |
aaatgaatggaatgaggatgaaatgcagagtgaagtacttatatacgcgcgcgcaagagagtgaaatggttag-aga-aatattgtaagcgtgtgagttt |
38607190 |
T |
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| Q |
189 |
gttac |
193 |
Q |
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||||| |
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| T |
38607189 |
gttac |
38607185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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