View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_41 (Length: 228)
Name: NF10132_low_41
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_41 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29945389 - 29945162
Alignment:
| Q |
1 |
tgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29945389 |
tgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaac |
29945290 |
T |
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| Q |
101 |
cgtatgactgcacatggtgaaagattagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29945289 |
cgtatgactgcacatggtgaaagattagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaattg |
29945190 |
T |
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| Q |
201 |
aagaatcaaatgatgttacaacactctc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29945189 |
aagaatcaaatgatgttacaacactctc |
29945162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10784521 - 10784297
Alignment:
| Q |
1 |
tgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
10784521 |
tgctcaattgcaaactttacgtagagaatttgagattcttgctatgaaagaaggtgaaactgtgaatgaatacatttcaagaactcttgcaattgttaac |
10784422 |
T |
|
| Q |
101 |
cgtatgactgcacatggtgaaagattagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaattg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
10784421 |
cgtatgactgcacatggtgaaagattatagcaaacagtaattgtagagaaagtgttgagatccatgacatcaagattcaattatgttgtttgctcaattg |
10784322 |
T |
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| Q |
201 |
aagaatcaaatgatgttacaacact |
225 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
10784321 |
aagaatcaaatgatgttacagcact |
10784297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 61725 - 61501
Alignment:
| Q |
1 |
tgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaac |
100 |
Q |
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|||||||||| |||||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
61725 |
tgctcaattgcaaactttacgcagataatttgaagttcttgctatgaaaaaaggtaaaacagtgaatgaatatatctcaagaactcttgcaattgctaac |
61626 |
T |
|
| Q |
101 |
cgtatgactgcacatggtgaaagattagagcaaac--tgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaat |
198 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| | |||||||||| | || ||||| ||||| ||||||||||| || ||||||| ||||| |
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| T |
61625 |
cgtatgactgcacatggtgaaagattagaacaaactgtgtgactgtagagaaatttttaagatccatgacctcaagattcaactacattgtgtgttcaat |
61526 |
T |
|
| Q |
199 |
tgaagaatcaaatgatgttacaaca |
223 |
Q |
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||||||||||||| | ||||||||| |
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| T |
61525 |
tgaagaatcaaattacgttacaaca |
61501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 27232857 - 27232975
Alignment:
| Q |
2 |
gctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaacc |
101 |
Q |
| |
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||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |||| |
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| T |
27232857 |
gctcagttgaaaactttacgaagagaatttgaagttcttgatatgaaagaaggtgaagcagtgaat---------tcaagaactcttgcaattgataacg |
27232947 |
T |
|
| Q |
102 |
gtatgactgcacatggtgaaagattaga |
129 |
Q |
| |
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||||||||||||||||||||| |||||| |
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| T |
27232948 |
gtatgactgcacatggtgaaaaattaga |
27232975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 46434175 - 46434085
Alignment:
| Q |
2 |
gctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaa |
92 |
Q |
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||||||||| ||||| | ||| | |||||||| |||||| | |||||||| |||||| | |||||||| ||||| |||||||||||||| |
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| T |
46434175 |
gctcaattgcaaactcttcgtcgtgaatttgaagttctttccatgaaagatggtgaatctgtgaatgattacattggaagaactcttgcaa |
46434085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 3036448 - 3036488
Alignment:
| Q |
176 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
216 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
3036448 |
ttcaattatgtggtgtgctctattgaagaatctaatgatgt |
3036488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 7852450 - 7852260
Alignment:
| Q |
26 |
gaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaaccgtatgactgcacatggtgaaagat |
125 |
Q |
| |
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|||||||| |||||||| ||||||||||||||| | |||||||| ||||| ||||||||| || ||||| ||||| ||||| ||||||| ||||||| |
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| T |
7852450 |
gaatttgaagttcttgcaatgaaagaaggtgaatctgtgaatgattacattggaagaactctagcgattgcaaaccgcatgacatcacatggggaaagat |
7852351 |
T |
|
| Q |
126 |
tagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
216 |
Q |
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| || ||||| |||||||| || || ||||| | || ||||| |||| |||||||| || |||||||| ||||||||||| |||||||| |
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| T |
7852350 |
tggaacaaaccgtaattgtggaaaaggtgttacgttctatgacttcaaatttcaattacgtagtgtgctccattgaagaatccaatgatgt |
7852260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 601762 - 601979
Alignment:
| Q |
2 |
gctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaacc |
101 |
Q |
| |
|
||||||||| ||||| | ||| | |||||||| |||||| | ||||||||||||||| | |||||| | ||| | |||||||||||||||||| |||| |
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| T |
601762 |
gctcaattgcaaactcttcgtcgtgaatttgaagttctttccatgaaagaaggtgaatctgtgaattattacgttggaagaactcttgcaattgcaaacc |
601861 |
T |
|
| Q |
102 |
gtatgactgcacatggtgaaagattagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaattga |
201 |
Q |
| |
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||||||| ||||||||||||||||||| |||||| | ||||| ||||| || || | || ||||| ||| ||||| ||||| || || |||||||| |
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| T |
601862 |
gtatgacatcacatggtgaaagattagaacaaactattattgtggagaaggttctgcgttctatgactccaaagttcaactatgtagtttgttcaattga |
601961 |
T |
|
| Q |
202 |
agaatcaaatgatgttac |
219 |
Q |
| |
|
||||| |||||| |||| |
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| T |
601962 |
ggaatccaatgatattac |
601979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 6582432 - 6582239
Alignment:
| Q |
26 |
gaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgcaattgctaaccgtatgactgcacatggtgaaagat |
125 |
Q |
| |
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||||| || |||||||| |||||||| ||||| | |||||||| ||||| || ||||||||||||| | || | ||||| | ||||||||||||| |
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| T |
6582432 |
gaattagaagttcttgccatgaaagatagtgaatctgtgaatgattacataggaaaaactcttgcaattacaaattgcatgacatctcatggtgaaagat |
6582333 |
T |
|
| Q |
126 |
tagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtgtgctcaattgaagaatcaaatgatgttac |
219 |
Q |
| |
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| ||||||||| | ||||| || ||||| || | |||||||| | | |||||| ||||| || || |||||||||||||| ||||||||||| |
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|
| T |
6582332 |
tggagcaaactattattgtggaaaaagttatgtgttcaatgactcccaaattcaactatgtagtttgttcaattgaagaatccaatgatgttac |
6582239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20541972 - 20542031
Alignment:
| Q |
1 |
tgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaac |
60 |
Q |
| |
|
|||||||||| || ||||||| | ||||||||| ||||||| ||||||||||||||||| |
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|
| T |
20541972 |
tgctcaattgcaatctttacgcaaggaatttgagattcttgcaatgaaagaaggtgaaac |
20542031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16863020 - 16863079
Alignment:
| Q |
1 |
tgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaac |
60 |
Q |
| |
|
|||||||||| || |||| |||| |||||||||| ||||||| ||||| ||||||||||| |
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|
| T |
16863020 |
tgctcaattgcaagctttgcgtaaagaatttgagattcttgcaatgaaggaaggtgaaac |
16863079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 20528819 - 20528868
Alignment:
| Q |
176 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgttacaacact |
225 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
20528819 |
ttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacact |
20528868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 35372209 - 35372148
Alignment:
| Q |
158 |
agatcaatgacatcaagattcaattatgttgtgtgctcaattgaagaatcaaatgatgttac |
219 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||||| | || |||||||| ||||||||||| |
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|
| T |
35372209 |
agatccatgacatcaagattcaactatgtggtgtgtactatagaagaatctaatgatgttac |
35372148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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