View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_43 (Length: 224)
Name: NF10132_low_43
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3059358 - 3059557
Alignment:
| Q |
1 |
aaatttgttggaaagcattctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaacaaccagccacaaggaaagtgattgtt |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3059358 |
aaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgtt |
3059457 |
T |
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| Q |
101 |
ggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagcagcaacaaaatca |
200 |
Q |
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| T |
3059458 |
ggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagcagcaccaaaatca |
3059557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 17442842 - 17442643
Alignment:
| Q |
1 |
aaatttgttggaaagcattctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaacaaccagccacaaggaaagtgattgtt |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17442842 |
aaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgtt |
17442743 |
T |
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| Q |
101 |
ggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagcagcaacaaaatca |
200 |
Q |
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| T |
17442742 |
ggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagcagcaccaaaatca |
17442643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 4874001 - 4874200
Alignment:
| Q |
1 |
aaatttgttggaaagcattctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaacaaccagccacaaggaaagtgattgtt |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4874001 |
aaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaaggaaagtgattgtt |
4874100 |
T |
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| Q |
101 |
ggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagcagcaacaaaatca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4874101 |
ggtacaaaggaaaaaaaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagcagcaccaaaatca |
4874200 |
T |
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