View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_6 (Length: 472)
Name: NF10132_low_6
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 40675305 - 40675746
Alignment:
| Q |
17 |
acattgcacattttccggtgattagagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaatagagagttacaacaatttgcttta |
116 |
Q |
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| T |
40675305 |
acattgcacattttccggtgatttgagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaatagagagttacaacaatttgcagta |
40675404 |
T |
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| Q |
117 |
tcatcttcatctcatttttatagccgttttccaaaatcattctctttacgtaggaaagtgccatggtggtaccaaatactccatccacgttcaccatttg |
216 |
Q |
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| T |
40675405 |
tcatcttcatctcatttttatagccgttttccaaaatcattctctttacgtaagaaagtgccatggtggtaccaaatactccatccacgttcaccatttg |
40675504 |
T |
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| Q |
217 |
tggcaaaatggaacgtaacattcctctatgcttgtctctttgctttgtttttagaccctctttatttctatattcctattacaggagacaaagcgtgcat |
316 |
Q |
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| T |
40675505 |
tggcaaaatggaacgtaacattcctctatgcttgtctctttgctttgtttttagaccctctttatttctatattcctattacaggagacaaagcgtgcat |
40675604 |
T |
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| Q |
317 |
ggaaacagatttggttcttggtttgttagtcacgttctcgcgaaccgtcgcagatctcttcttcttgtttcacatgattcttaagttcagaactgccttc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40675605 |
ggaaacagatttggttcttggtttgttagtcacgttctcgcgaaccgtcgcagatctcttcttcttgtttcacataattcttaagttcagaactgccttc |
40675704 |
T |
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| Q |
417 |
aattctcctacctctttcgtttatggtcgcaaagaacttatc |
458 |
Q |
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| T |
40675705 |
aattctcctacctctttcgtttatggtcgcaaagaacttatc |
40675746 |
T |
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