View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_8 (Length: 426)
Name: NF10132_low_8
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 42409916 - 42410299
Alignment:
| Q |
19 |
ggatactctttatcagacaagaagtgttttaagccaaaaatagacaatgttgtttgtattgtataatatttagggtatcttgtattataagtattgatga |
118 |
Q |
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| T |
42409916 |
ggatactctttatcagacaagaagtgttttaagccaaaaatagacaatgttgtttgtattgtataatatttagggtatcttgtattataagtattgatga |
42410015 |
T |
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| Q |
119 |
aataataaggaccaagagaaaaataaaatatgaaataataaaagatttgaagggagtgagtggatgaggttaaaggtttggttacggtaatgaaaagaac |
218 |
Q |
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| T |
42410016 |
aataataaggaccaagagaaaaataaaatatgaaataataaaagatttgaagggagtgagtggatgaggttaaaggtttggttacggtaatgaaaagaac |
42410115 |
T |
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| Q |
219 |
acgagttagtggggacagtgagtgttcttaccaagtgtttatgtgtggctgtagagtcatggacacaaaataataatggcttaaagcatgcatgttgaca |
318 |
Q |
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| T |
42410116 |
acgagttagtggggacagtgagtgttcttaccaagtgtttatgtgtggctgtagagtcatggacacaaaataa-------ttaaagcatgcatgttgaca |
42410208 |
T |
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| Q |
319 |
ttgtaattagtttgtggataccattcgatctataacaacaaacaactagctcagttgttattataaacagtgtactacagttcttgtatttgtct |
413 |
Q |
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| T |
42410209 |
ttgtaattagtttgtggataccattcgatctataac----aacaactagctcagttgttattataaacagtgtactacagtacttgtatttgtct |
42410299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 34456139 - 34456192
Alignment:
| Q |
211 |
aaaagaacacgagttagtggggacagtgagtg-ttcttaccaagtgtttatgtg |
263 |
Q |
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| T |
34456139 |
aaaagaacaagagttagtggggacagtaagtgtttcctaccaagtgtttgtgtg |
34456192 |
T |
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