View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10132_low_9 (Length: 421)
Name: NF10132_low_9
Description: NF10132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10132_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 49691046 - 49690645
Alignment:
| Q |
1 |
agaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttcc |
100 |
Q |
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| T |
49691046 |
agaactatttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcataaaaaaa-gttcc |
49690948 |
T |
|
| Q |
101 |
aaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaata |
200 |
Q |
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| T |
49690947 |
aaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaata |
49690848 |
T |
|
| Q |
201 |
gggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattat |
300 |
Q |
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| T |
49690847 |
gtgttgccaatggaccagtgattatcaatctttttaacttggaagagttttcctcttttggttaactggacatacttcatagcagttttgttgagattat |
49690748 |
T |
|
| Q |
301 |
cacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggaca |
400 |
Q |
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| T |
49690747 |
cacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaaaaaacccaagatttccacaaccaaatgagtctggaca |
49690648 |
T |
|
| Q |
401 |
atc |
403 |
Q |
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||| |
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| T |
49690647 |
atc |
49690645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 49679412 - 49679018
Alignment:
| Q |
1 |
agaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
49679412 |
agaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttatgtagtttttcataaaaaaaagttcc |
49679313 |
T |
|
| Q |
101 |
aaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaata |
200 |
Q |
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| T |
49679312 |
aaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattggggtcaataatggaaata |
49679213 |
T |
|
| Q |
201 |
gggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattat |
300 |
Q |
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| T |
49679212 |
gtgttgccaatggacccgcgattatcaatgtttgtaacttgaaagagttttcctcctttggttaactggacgtgcttcatagcagttttgttgagattat |
49679113 |
T |
|
| Q |
301 |
cacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggaca |
400 |
Q |
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| T |
49679112 |
cacaaccttgaattgccaatgtaccacagcttgggaattcaactgttgtaaaagggtatttaatcaa--------ttccacaatcaaatgattctggaca |
49679021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 4 - 403
Target Start/End: Complemental strand, 49686774 - 49686385
Alignment:
| Q |
4 |
actatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttccaaa |
103 |
Q |
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||||||| ||||||||||| |||| || | | || |||||||| |||||||| ||||||||||||||||||||| || |||||| |||||||| |
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| T |
49686774 |
actatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaa-gttccaaa |
49686676 |
T |
|
| Q |
104 |
aggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaataggg |
203 |
Q |
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|||||||| ||||||||| || |||| ||| ||| || ||||| ||||||||||||| |||||||||||||| ||| | |||| ||||||||||| | |
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| T |
49686675 |
aggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtg |
49686579 |
T |
|
| Q |
204 |
ttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattatcac |
303 |
Q |
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||| | || | ||| | ||| ||| ||||||| ||| ||||||| | |||| | |||||||| | ||| |||||||||||||||||| |||| |
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| T |
49686578 |
ttg------ggccgctcatttttaatgtttgtaacttgaaagtgttttcctcctttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcac |
49686485 |
T |
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| Q |
304 |
aaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatc |
403 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |||||| |||||||||||||||||||||||||||| |
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| T |
49686484 |
aaccttgaattgccaatgcaccacagtttgggaattcaactgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatc |
49686385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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