View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10133_high_12 (Length: 277)

Name: NF10133_high_12
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10133_high_12
NF10133_high_12
[»] chr6 (10 HSPs)
chr6 (67-239)||(11313891-11314063)
chr6 (72-147)||(16263984-16264059)
chr6 (1-48)||(11314094-11314141)
chr6 (67-146)||(16260783-16260862)
chr6 (70-128)||(11589343-11589401)
chr6 (67-146)||(11308270-11308350)
chr6 (67-147)||(16242168-16242248)
chr6 (75-131)||(6052510-6052566)
chr6 (67-112)||(607830-607875)
chr6 (89-130)||(6052319-6052360)
[»] chr3 (10 HSPs)
chr3 (67-200)||(43020030-43020163)
chr3 (67-148)||(37521851-37521931)
chr3 (72-146)||(43021621-43021695)
chr3 (69-139)||(36656874-36656944)
chr3 (67-150)||(24515997-24516080)
chr3 (75-145)||(8237740-8237810)
chr3 (67-126)||(8993660-8993719)
chr3 (95-145)||(9011842-9011892)
chr3 (84-145)||(42486318-42486379)
chr3 (67-123)||(44808356-44808411)
[»] chr1 (17 HSPs)
chr1 (67-145)||(10765758-10765836)
chr1 (72-130)||(38832845-38832903)
chr1 (67-131)||(5494116-5494180)
chr1 (78-145)||(3346670-3346737)
chr1 (72-145)||(3346044-3346117)
chr1 (72-150)||(12214989-12215067)
chr1 (67-144)||(5493273-5493350)
chr1 (136-229)||(35909432-35909524)
chr1 (71-136)||(18970584-18970646)
chr1 (71-130)||(39015485-39015544)
chr1 (75-146)||(35908906-35908977)
chr1 (72-144)||(14230448-14230520)
chr1 (67-131)||(18969946-18970010)
chr1 (91-130)||(5489598-5489637)
chr1 (101-131)||(5491494-5491524)
chr1 (100-145)||(34308345-34308391)
chr1 (74-118)||(13413790-13413834)
[»] chr2 (8 HSPs)
chr2 (67-147)||(38564584-38564664)
chr2 (86-202)||(21135337-21135453)
chr2 (73-145)||(22898040-22898112)
chr2 (86-146)||(38564014-38564074)
chr2 (67-146)||(27530195-27530274)
chr2 (90-130)||(18788262-18788302)
chr2 (71-146)||(16264137-16264214)
chr2 (67-127)||(44021769-44021830)
[»] chr5 (10 HSPs)
chr5 (67-146)||(34799970-34800049)
chr5 (67-146)||(20454504-20454585)
chr5 (67-136)||(19986858-19986927)
chr5 (73-145)||(2807991-2808063)
chr5 (75-145)||(19516607-19516677)
chr5 (70-114)||(3959690-3959734)
chr5 (83-146)||(30772763-30772826)
chr5 (108-146)||(19516171-19516209)
chr5 (73-114)||(17292641-17292682)
chr5 (72-144)||(3957302-3957373)
[»] chr8 (8 HSPs)
chr8 (72-145)||(24409222-24409295)
chr8 (67-127)||(38214630-38214690)
chr8 (85-164)||(5180933-5181012)
chr8 (91-147)||(41829456-41829512)
chr8 (91-150)||(29760894-29760953)
chr8 (71-146)||(18030374-18030451)
chr8 (74-125)||(5182235-5182286)
chr8 (67-131)||(18027883-18027947)
[»] chr4 (13 HSPs)
chr4 (67-147)||(5371032-5371114)
chr4 (71-146)||(35603172-35603247)
chr4 (72-131)||(30925380-30925439)
chr4 (72-131)||(30925999-30926058)
chr4 (67-150)||(24549931-24550014)
chr4 (72-150)||(49605304-49605382)
chr4 (72-130)||(49605909-49605967)
chr4 (67-136)||(2215671-2215740)
chr4 (72-145)||(19655644-19655717)
chr4 (72-144)||(2483812-2483884)
chr4 (99-150)||(46333847-46333897)
chr4 (72-145)||(23630788-23630860)
chr4 (67-139)||(35595928-35595999)
[»] chr7 (11 HSPs)
chr7 (72-146)||(43071696-43071770)
chr7 (67-175)||(38796670-38796778)
chr7 (75-146)||(7579327-7579398)
chr7 (90-201)||(6026856-6026972)
chr7 (67-114)||(11060137-11060184)
chr7 (103-146)||(41554589-41554632)
chr7 (70-124)||(3303524-3303578)
chr7 (75-136)||(9136749-9136810)
chr7 (67-123)||(24252318-24252374)
chr7 (79-137)||(7737609-7737668)
chr7 (67-139)||(23657847-23657918)
[»] scaffold0010 (2 HSPs)
scaffold0010 (84-150)||(157296-157362)
scaffold0010 (95-146)||(155337-155388)
[»] scaffold0112 (1 HSPs)
scaffold0112 (71-146)||(24964-25039)
[»] scaffold0443 (1 HSPs)
scaffold0443 (100-176)||(5435-5511)
[»] scaffold0006 (1 HSPs)
scaffold0006 (72-118)||(280324-280370)
[»] scaffold0486 (1 HSPs)
scaffold0486 (67-116)||(1519-1568)
[»] scaffold0041 (1 HSPs)
scaffold0041 (79-144)||(7301-7365)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 11314063 - 11313891
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaagtctttctttttaaca 166  Q
    |||||||||||||||||  |||||||||| ||||| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||    
T  11314063 ggggttgctaacttactctcacctaaaaatatgaaagagtaagttagcaagtctactcccacttattttttactaaaaaccgaagtctttcttttgaaca 11313964  T
Q  167 actacttaaatatgggggtacgagtgtaatttacacatctccaaacaatcaatgtctccttaccctcatttaa 239  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11313963 actacttaaatatgggggtactagtgtaatttacacatctccaaacaattaatgtctccttaccctcatttaa 11313891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 16264059 - 16263984
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacc 147  Q
    |||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  16264059 tgctaacttactcccacccaaaaacatgaatgagtaagttatcaagcctactcccacttgtttttgactaaaaacc 16263984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11314141 - 11314094
Alignment:
Q  1 aaatgggacattattcattaatttattaatattacaagttagtatgta 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11314141 aaatgggacattattcattaatttattaatattacaagttagtatgta 11314094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 16260783 - 16260862
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||| |||||||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||   |||||||||||||    
T  16260783 ggggctgctaacttactcccacccaaaaacatgaaggagtgagttagcaagcatactcccacttaccttttactaaaaac 16260862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 11589401 - 11589343
Alignment:
Q  70 gttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccac 128  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  11589401 gttgttaacttactcccacctaaaaacatgaaggagtaagttagcaagcttactcccac 11589343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 11308270 - 11308350
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgt-tttttactaaaaac 146  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||||  |||| ||||||||| |||||| |||||||    
T  11308270 ggggttgctaacttactcccacttaaaaacacgaaggagtaagttagcaaatctacccccacttgtctttttattaaaaac 11308350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 16242248 - 16242168
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacc 147  Q
    |||| |||||||||||| ||||| ||||| || |||||  ||||||||||||||||||||||||  |||| ||||||||||    
T  16242248 ggggctgctaacttactcccaccaaaaaatataaaggataaagttagcaagcctactcccacttccttttgactaaaaacc 16242168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 6052566 - 6052510
Alignment:
Q  75 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttg 131  Q
    |||||||||  |||| |||| |||||| |||||||||||||||||||||| ||||||    
T  6052566 taacttactctcacccaaaatcatgaaagagtaagttagcaagcctactctcacttg 6052510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 607830 - 607875
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagtta 112  Q
    |||||||||||||||||  ||||||||||| |||| ||||||||||    
T  607830 ggggttgctaacttactctcacctaaaaacgtgaaagagtaagtta 607875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 6052319 - 6052360
Alignment:
Q  89 ctaaaaacatgaaggagtaagttagcaagcctactcccactt 130  Q
    |||||||||||||||||| |||||||||| ||||| ||||||    
T  6052319 ctaaaaacatgaaggagtgagttagcaagtctacttccactt 6052360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 43020030 - 43020163
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaagtctttctttttaaca 166  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  43020030 ggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcatactcccacttgtcttttactaaaatcccaagtctttctttttaaca 43020129  T
Q  167 actacttaaatatgggggtacgagtgtaatttac 200  Q
    || ||||| |||||||||||| ||||||||||||    
T  43020130 acgacttatatatgggggtactagtgtaatttac 43020163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 37521851 - 37521931
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaaccc 148  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  37521851 ggggctgctaacttactcccacccaaaaacatgaaggagtaagttagcaa-cctactcccacttgtattttactaaaaaccc 37521931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 43021695 - 43021621
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||   |||||||||||||    
T  43021695 tgctaacttactcccacttaaaaacatgaaggagtaagttagcaagcctacacccacttaccttttactaaaaac 43021621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 36656944 - 36656874
Alignment:
Q  69 ggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttac 139  Q
    ||||| |||||||||  ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  36656944 ggttgttaacttactctcacctaaaaacatgaagaagtaagttagcaagcctaatcccatttgttttttac 36656874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 24515997 - 24516080
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    |||||||||||||||||  |||| ||||| |||||| ||  |||||||||||||||| ||||||||||||||| ||||| ||||    
T  24515997 ggggttgctaacttactcacacccaaaaatatgaagaagcgagttagcaagcctactaccacttgttttttaccaaaaaaccaa 24516080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 8237740 - 8237810
Alignment:
Q  75 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||| ||||| |||||| |||| || |||||    
T  8237740 taacttactcccacctaaaaatatgaaggaataagttagcaagcttactctcacttggttttgaccaaaaa 8237810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 8993660 - 8993719
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactccc 126  Q
    |||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||    
T  8993660 ggggttgctaacttactctcatccaaaatcatgaaggagtaagttagcaagtctactccc 8993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 9011842 - 9011892
Alignment:
Q  95 acatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||| |||||    
T  9011842 acatgaaggagtaagttagcaagtctactcccacttagtttttaccaaaaa 9011892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 42486318 - 42486379
Alignment:
Q  84 tccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||||||||| |||||| ||||||||||||||  |||||||||||  ||||||| |||||    
T  42486318 tccacctaaaaatatgaagaagtaagttagcaagtttactcccacttaatttttaccaaaaa 42486379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 44808356 - 44808411
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctact 123  Q
    ||||| ||||||||||| |||||||||||||| || ||||||| |||||| ||||||    
T  44808356 ggggtcgctaacttactcccacctaaaaacat-aaagagtaagatagcaaccctact 44808411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 10765758 - 10765836
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10765758 ggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgatttttactaaaaa 10765836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 38832845 - 38832903
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 130  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38832845 tgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 38832903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 5494180 - 5494116
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttg 131  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5494180 ggggttgctaacttattcccacccaaaaacatgaaggagtaagttagcaagcctactcccacttg 5494116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 3346737 - 3346670
Alignment:
Q  78 cttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  3346737 cttactcccacctaaaaacatgaaggagtaagttagcaaccctactcccactagtattttactaaaaa 3346670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 3346044 - 3346117
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||    
T  3346044 tgctaacttagtcccacctaaaaacatgaaggagtaagttagcaaccctactcccactagtattttacaaaaaa 3346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 12214989 - 12215067
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    |||||||||||| ||||  |||||||||| |||||||||||||||  ||||||||||| || |||||||||||||||||    
T  12214989 tgctaacttactcccactcaaaaacatgatggagtaagttagcaactctactcccactagtattttactaaaaacccaa 12215067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 5493273 - 5493350
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaa 144  Q
    |||| |||||||||||| | ||| ||||| |||||| |||||||||||||| |||||||||||||| |||||| ||||    
T  5493273 ggggctgctaacttactccaacccaaaaatatgaagcagtaagttagcaagtctactcccacttgtcttttaccaaaa 5493350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 35909524 - 35909432
Alignment:
Q  136 ttactaaaaacccaagtctttctttttaacaactacttaaatatgggggtacgagtgtaatttacacatctccaaacaatcaatgtctccttac 229  Q
    |||| |||||| ||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||  ||||  |||||| |||||||| ||||    
T  35909524 ttaccaaaaactcaagtttttctttttaacaaccacttaaatat-ggggtactagtgtaatttacatctctcgtaacaattaatgtctctttac 35909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 18970646 - 18970584
Alignment:
Q  71 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttt 136  Q
    ||||||||||||| |||||||||||||||   |||||||||||||| |||||||||| ||||||||    
T  18970646 ttgctaacttactcccacctaaaaacatg---gagtaagttagcaaacctactcccaattgttttt 18970584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 39015544 - 39015485
Alignment:
Q  71 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 130  Q
    ||||| ||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||    
T  39015544 ttgctgacttactcccacccaaaatcatgaaggagtaagttagcaagtctactcccactt 39015485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 35908906 - 35908977
Alignment:
Q  75 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||| ||| |||||| |||||||||||||| ||||||| || ||||||||||  ||||||| |||||    
T  35908906 taacttactcccatctaaaatcatgaaggagtaagatagcaagtcttctcccacttgccttttactgaaaac 35908977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 14230520 - 14230448
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaa 144  Q
    |||||||||||| |||  |||||| ||||||||||||||||||| |  ||||  |||||| ||||||||||||    
T  14230520 tgctaacttactaccaattaaaaatatgaaggagtaagttagcatgtttacttacacttgctttttactaaaa 14230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 18969946 - 18970010
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttg 131  Q
    |||| |||||| || || ||||||||||| |||||  |||||||||||||||||| |||||||||    
T  18969946 ggggctgctaattttctcccacctaaaaatatgaaatagtaagttagcaagcctaatcccacttg 18970010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 5489598 - 5489637
Alignment:
Q  91 aaaaacatgaaggagtaagttagcaagcctactcccactt 130  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  5489598 aaaaatatgaaggagtaagttagcaagtctactcccactt 5489637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 5491524 - 5491494
Alignment:
Q  101 aggagtaagttagcaagcctactcccacttg 131  Q
    |||||||||||||||||||||||||||||||    
T  5491524 aggagtaagttagcaagcctactcccacttg 5491494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 34308391 - 34308345
Alignment:
Q  100 aaggagtaagttagcaagcctactcccacttgtttt-ttactaaaaa 145  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  34308391 aaggagtaagttagcaagcctactctcacttcttttattactaaaaa 34308345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 13413790 - 13413834
Alignment:
Q  74 ctaacttacttccacctaaaaacatgaaggagtaagttagcaagc 118  Q
    ||||||||| ||||||||||||||| |||| | ||||||||||||    
T  13413790 ctaacttacatccacctaaaaacattaaggtgcaagttagcaagc 13413834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 38564664 - 38564584
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacc 147  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||    
T  38564664 ggggatgctaacttacttccacctaaaaacatgaaggagtaagttagcaaggttactcccacttaatttttactaaaaacc 38564584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 21135453 - 21135337
Alignment:
Q  86 cacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaagtctttctttttaacaactacttaaatatgggggt 185  Q
    ||||||||||||||||||| ||||||| ||| |||||||  ||||||  || ||||||||| ||| |  |||||||||||||||||||||| | | ||||    
T  21135453 cacctaaaaacatgaaggattaagttaacaaccctactctgacttgtcattaactaaaaactcaaattcttctttttaacaactacttaaacaggtgggt 21135354  T
Q  186 acgagtgtaatttacac 202  Q
    |  ||||||||||||||    
T  21135353 attagtgtaatttacac 21135337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 22898040 - 22898112
Alignment:
Q  73 gctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||  |||||||    
T  22898040 gctaatttactcccacctaaaaacatgaaggagtaagttaacaagcctacttccacttgcttttctctaaaaa 22898112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 38564014 - 38564074
Alignment:
Q  86 cacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  38564014 cacccaaaaacatgaaggagtaaggtaacaagcctactcccacttggtttttactaaaaac 38564074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 27530274 - 27530195
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||||||||||| ||||| |||||||||||||||||| | ||||||  |||| |||||||  |||||||||||||    
T  27530274 ggggttgctaacttactcccacccaaaaacatgaaggagtaactgagcaaggttacttccacttgcattttactaaaaac 27530195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 18788302 - 18788262
Alignment:
Q  90 taaaaacatgaaggagtaagttagcaagcctactcccactt 130  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18788302 taaaaacatgaaagagtaagttagcaagcctactcccactt 18788262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 16264214 - 16264137
Alignment:
Q  71 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccact--tgttttttactaaaaac 146  Q
    ||||||||| | || |||||||||||| |||||||||||||| |||| |||||| ||||  | |||||||||||||||    
T  16264214 ttgctaactaattttcacctaaaaacacgaaggagtaagttaacaagtctactctcacttatattttttactaaaaac 16264137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 44021830 - 44021769
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagc-aagcctactccca 127  Q
    |||| ||| |||||||  ||||||||||| |||||||||||||||||| |||||||||||||    
T  44021830 ggggctgccaacttacacccacctaaaaatatgaaggagtaagttagcaaagcctactccca 44021769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 34799970 - 34800049
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  34799970 ggggctgctaacttactcccacctaaaatcatgaaggagtaagttaccaagcctactcccacttgctttttactaaaaac 34800049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 20454585 - 20454504
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaaca--tgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||| |||||||||||| | |||||||||||  |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  20454585 ggggctgctaacttactccaacctaaaaacacatgaaggagaaagttagcaagcctactcccacttgctttttactaaaaac 20454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 19986927 - 19986858
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttt 136  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||| ||||    
T  19986927 ggggttgctaacttactcccacctaaaaacatgaaggagtaagttagcaatcttcctcccacttggtttt 19986858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 2807991 - 2808063
Alignment:
Q  73 gctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||    
T  2807991 gctaacttactctcacctaaaaacacgaaggagtaagttagcaagcctacttccacttgcattttactaaaaa 2808063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 19516677 - 19516607
Alignment:
Q  75 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    ||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  19516677 taacttactcccacacaaaaacatgaaggagtaagttagcaagtctactcccacttagtttttactaaaaa 19516607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 3959734 - 3959690
Alignment:
Q  70 gttgctaacttacttccacctaaaaacatgaaggagtaagttagc 114  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  3959734 gttgctaacttactcccaccaaaaaacatgaaggagtaagttagc 3959690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 30772826 - 30772763
Alignment:
Q  83 ttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||||||||||||||||||| ||||| |||  |||| ||||| |||||  ||||||||||||||    
T  30772826 ttccacctaaaaacatgaagaagtaaattaataagcatactctcacttactttttactaaaaac 30772763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 19516171 - 19516209
Alignment:
Q  108 agttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  19516171 agttagcaagcctactcccacttagtttttactaaaaac 19516209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 17292682 - 17292641
Alignment:
Q  73 gctaacttacttccacctaaaaacatgaaggagtaagttagc 114  Q
    ||||||||||||||||| |||||||| |||||||||| ||||    
T  17292682 gctaacttacttccaccaaaaaacattaaggagtaagctagc 17292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 3957302 - 3957373
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaa 144  Q
    |||||||| ||| ||||| ||||| ||||||  |||||||||||||| ||||||||||| | |||||| ||||    
T  3957302 tgctaactaactcccacccaaaaatatgaagt-gtaagttagcaagcttactcccacttatgttttaccaaaa 3957373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 24409222 - 24409295
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  24409222 tgctaacttactcccacccaaaaacatgaaggagtaagttagcaagcctactcccacttgcttttgacttaaaa 24409295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 38214630 - 38214690
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactccca 127  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38214630 ggggctgctaacttacttccacccaaaaacatgaaggagtaagttagcaagcctactccca 38214690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 5180933 - 5181012
Alignment:
Q  85 ccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaagtctttctttttaa 164  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| || ||| |||||||||| ||| ||| |||||    
T  5180933 ccacctaaaaacatgaaagagtaagttagcaagcctactcccacttgtcttctaccaaaaacccaattctatctatttaa 5181012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 41829512 - 41829456
Alignment:
Q  91 aaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacc 147  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||    
T  41829512 aaaaacatgaaggagtaagttagcaagtctactcccacttgtcttttaccaaaaacc 41829456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 29760894 - 29760953
Alignment:
Q  91 aaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    |||||||||||||||||||||||||||||||||| |||| |  ||||||||||| |||||    
T  29760894 aaaaacatgaaggagtaagttagcaagcctactctcactagcattttactaaaatcccaa 29760953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 18030451 - 18030374
Alignment:
Q  71 ttgctaacttact--tccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||||||||||||  |||||| ||||| ||||| |||||||||| |||| |||||||||||||   ||||||||||||    
T  18030451 ttgctaacttactcttccacccaaaaatatgaaagagtaagttaacaagtctactcccacttgccatttactaaaaac 18030374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 5182286 - 5182235
Alignment:
Q  74 ctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcc 125  Q
    |||||||| | |||||||||||| ||||||| ||||||||||| ||||||||    
T  5182286 ctaacttattcccacctaaaaacgtgaaggattaagttagcaaccctactcc 5182235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 18027883 - 18027947
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttg 131  Q
    ||||||||||| |||||  || | |||||||| || ||||||||||||||||||| || ||||||    
T  18027883 ggggttgctaatttactcacatccaaaaacataaaagagtaagttagcaagcctattctcacttg 18027947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 5371114 - 5371032
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaaca--tgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacc 147  Q
    |||| |||||||||||| | |||||||||||  |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5371114 ggggctgctaacttactccaacctaaaaacacatgaaggagaaagttagcaagcctactcccacttgctttttactaaaaacc 5371032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 35603247 - 35603172
Alignment:
Q  71 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||    
T  35603247 ttgctaacttactcccacccaaaaacatgaaggagtaagttagcaagcttattcccacttgctttttaccaaaaac 35603172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 30925380 - 30925439
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttg 131  Q
    |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  30925380 tgctaacttactcccacctaaaaatattaaggagtaagttagcaagcctactcccacttg 30925439  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 30926058 - 30925999
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttg 131  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  30926058 tgctaacttactcccatctaaaaacatgaaggagtaagttagcaagtctactcccacttg 30925999  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 24550014 - 24549931
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    |||| |||||||||| | ||||  ||||||||||| |||||||||||||| | ||||||| |||| ||||||||||||||||||    
T  24550014 ggggctgctaacttagtcccactcaaaaacatgaatgagtaagttagcaaccttactcccgcttgatttttactaaaaacccaa 24549931  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 49605304 - 49605382
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    ||||||||||| |||||  ||||||||| | |||||||||||||| |||||||||||| || |||||| ||||| ||||    
T  49605304 tgctaacttacctccactcaaaaacatgtaagagtaagttagcaaccctactcccactagtattttaccaaaaaaccaa 49605382  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 49605967 - 49605909
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 130  Q
    |||||||||||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||    
T  49605967 tgctaacttactcccacccaaaaacatggaggagtaagttagaaagtctactcccactt 49605909  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 2215740 - 2215671
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttt 136  Q
    |||||||||||||||||  |||||||||| | ||||||||||| ||||||||||||| ||| ||| ||||    
T  2215740 ggggttgctaacttactctcacctaaaaatacgaaggagtaagctagcaagcctacttccatttgctttt 2215671  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 19655717 - 19655644
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||| ||||||| |||| || ||||| |||||    
T  19655717 tgctaacttactcccacctaaaaggatgaagtagtaagttagcaagtctactccaacttattctttaccaaaaa 19655644  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 2483884 - 2483812
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaa 144  Q
    ||||| ||||||  ||||||||||||||||||| |||| || ||||| ||||||||||| ||| | |||||||    
T  2483884 tgctagcttactctcacctaaaaacatgaaggaataaggtaacaagcttactcccacttctttatgactaaaa 2483812  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 46333897 - 46333847
Alignment:
Q  99 gaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||| ||||    
T  46333897 gaaggagtaagttagcaa-cctacacccacttggtttttactaaaaaaccaa 46333847  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 23630788 - 23630860
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaa 145  Q
    |||||| ||||  |||||||||||||| ||||||||| ||||||| | ||| ||||||||| |||||| |||||    
T  23630788 tgctaatttacacccacctaaaaacattaaggagtaaattagcaa-catacacccacttgtattttaccaaaaa 23630860  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 35595928 - 35595999
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttac 139  Q
    ||||||| ||||||||| ||| ||||||| || |||| |||||||| |||||||||||| |||| || |||||    
T  35595928 ggggttgataacttactcccaactaaaaatatcaagg-gtaagttaacaagcctactcctacttattatttac 35595999  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 43071770 - 43071696
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||||||   ||||||||||||    
T  43071770 tgctaacttactctcacccaaaaacatgaaggagtaagttagcaaccctactcccacttgccatttactaaaaac 43071696  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 38796778 - 38796670
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctac-tcccacttgttttttactaaaaacccaagtctttctttttaac 165  Q
    |||| |||||||||||  |||||||||||||| |||| | ||||||||||  ||||  |||||||||||||||||||||| ||||  |||||||| ||||    
T  38796778 ggggctgctaacttacacccacctaaaaacattaaggtgcaagttagcaa-actacaccccacttgttttttactaaaaagccaacactttctttctaac 38796680  T
Q  166 aactacttaa 175  Q
    ||| ||||||    
T  38796679 aacaacttaa 38796670  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 7579398 - 7579327
Alignment:
Q  75 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||| ||||||||| |||||||||||||||||||||| || |||| |||||  |||| |||||||||    
T  7579398 taacttactaccacctaaacacatgaaggagtaagttagcaaacccactctcacttacttttaactaaaaac 7579327  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 6026856 - 6026972
Alignment:
Q  90 taaaaacatgaaggagtaagttagcaagcctactccc----acttg-ttttttactaaaaacccaagtctttctttttaacaactacttaaatatggggg 184  Q
    |||||||||||||||| |||||| |||| |||||| |    ||||| |||||||| |||| | | | |||||| |||||||||||||| ||||||| |||    
T  6026856 taaaaacatgaaggagaaagttatcaagtctactcactcacacttgattttttaccaaaagctctaatctttcattttaacaactactaaaatatgaggg 6026955  T
Q  185 tacgagtgtaatttaca 201  Q
    ||  |||||||||||||    
T  6026956 tagtagtgtaatttaca 6026972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 11060137 - 11060184
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagc 114  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||    
T  11060137 ggggttgttagctttcttccacctaaaaacatgaaggagtaagttagc 11060184  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 41554589 - 41554632
Alignment:
Q  103 gagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  41554589 gagtaagttagcaagcctactcccacttgcattttactaaaaac 41554632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 3303578 - 3303524
Alignment:
Q  70 gttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactc 124  Q
    ||||||||||||||  || ||||||||||||| || |||||||||||||||||||    
T  3303578 gttgctaacttactctcatctaaaaacatgaaagactaagttagcaagcctactc 3303524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 9136749 - 9136810
Alignment:
Q  75 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttt 136  Q
    ||||||||| ||||  ||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  9136749 taacttactcccacacaaaaaaatgaatgagtacgttagcaagtctactcccacttgttttt 9136810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 24252318 - 24252374
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctact 123  Q
    ||||||| ||||||||| | ||| |||||||||||||||||| ||| ||||||||||    
T  24252318 ggggttgttaacttactccgacccaaaaacatgaaggagtaaattaacaagcctact 24252374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 7737668 - 7737609
Alignment:
Q  79 ttacttccacctaaaaacatgaagg-agtaagttagcaagcctactcccacttgtttttt 137  Q
    ||||| ||||||||||| |||| |  |||||||||||||| |||||||||||||||||||    
T  7737668 ttactcccacctaaaaatatgaggttagtaagttagcaagtctactcccacttgtttttt 7737609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 23657918 - 23657847
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttac 139  Q
    ||||||||||||||||  |||||||||||||  |||| | ||||||||||| |||| || |||| ||||||||    
T  23657918 ggggttgctaacttacacccacctaaaaacactaaggtgcaagttagcaag-ctacaccaacttattttttac 23657847  T

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Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 157362 - 157296
Alignment:
Q  84 tccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaa 150  Q
    ||||||||||||||||||||||||||||||||| || ||||||| ||| |||| || |||| |||||    
T  157362 tccacctaaaaacatgaaggagtaagttagcaaacccactcccatttgcttttgaccaaaagcccaa 157296  T

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Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 155337 - 155388
Alignment:
Q  95 acatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||||||||||||| || ||||| ||||||| |||||| ||||||||    
T  155337 acatgaaggagtaagttaggaaccctacccccacttattttttcctaaaaac 155388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 24964 - 25039
Alignment:
Q  71 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaaac 146  Q
    ||||||||||||  ||||  ||||||||  ||||||||||||||||  ||||||||||||||  ||||||||||||    
T  24964 ttgctaacttacacccactcaaaaacatacaggagtaagttagcaaatctactcccacttgtcatttactaaaaac 25039  T

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Target: scaffold0443 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 5511 - 5435
Alignment:
Q  100 aaggagtaagttagcaagcctactcccacttgttttttactaaaaacccaagtctttctttttaacaactacttaaa 176  Q
    |||| |||||||| ||| |||||||  ||||||  || ||||||||| ||| || ||||||||||||||||||||||    
T  5511 aaggtgtaagttaacaaccctactctgacttgtcattaactaaaaactcaaatccttctttttaacaactacttaaa 5435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 280324 - 280370
Alignment:
Q  72 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagc 118  Q
    ||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  280324 tgctaacttacatccacctaaaaacattaaggtgcaagttagcaagc 280370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0486 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 1568 - 1519
Alignment:
Q  67 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaa 116  Q
    ||||| |||||||||||  |||| ||||| ||||||||||||||||||||    
T  1568 ggggtggctaacttactcgcacccaaaaagatgaaggagtaagttagcaa 1519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 7365 - 7301
Alignment:
Q  79 ttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgttttttactaaaa 144  Q
    |||| ||||||||||||||  ||||  |||||||||||||| || ||||||||| |||||||||||    
T  7365 ttacatccacctaaaaacactaaggtataagttagcaagcc-acacccacttgtattttactaaaa 7301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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