View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10133_high_3 (Length: 386)
Name: NF10133_high_3
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 370
Target Start/End: Original strand, 14073050 - 14073417
Alignment:
| Q |
3 |
agttgtcgattttatatttgactttatagttcattcatgcaatgcaatgaaaatgaatttggttattagaaatgtgcaagtcaaatatattttgacgatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073050 |
agttgtcgattttatatttgactttatagttcattcatgcaatgcaatgaaaatgaatttggttattagaaatgtgcaagtcaaatatattttgacgatt |
14073149 |
T |
|
| Q |
103 |
taatatcacacacataaaataaaacatattttttgagaggataaaaacatttaaaattgtgatgttagatttgaaaaacttaataaattgaatgatattt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073150 |
taatatcacacacataaaataaaacatattttttgagaggataaaaacatttaaaattgtgatgttagatttgaaaaacttaataaattgaatgatattt |
14073249 |
T |
|
| Q |
203 |
ttcagtttaagagattaaactattattttgcaaatttaagggattaattttgtcgatccttatattggaaagattaaaatgctgctgatttattttataa |
302 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073250 |
ttcagtttaagggattaaactattattttgcaaatttaagggattaattttgtcgatccttatattggaaagattaaaatgctgctgatttattttataa |
14073349 |
T |
|
| Q |
303 |
atgaagtacaaatatatattaaacattaatttaaggttatttgttttagttggtgaactaatgattct |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14073350 |
atgaagtacaaatatatattaaacattaatctaaggttgtttgttttagttggtgaactaatgattct |
14073417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 14080540 - 14080894
Alignment:
| Q |
16 |
atatttgactttatagttcattcatgcaatgcaatgaaaatgaatttggttattagaaatgtgcaagtcaaatatattttgacgatttaatatcacacac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14080540 |
atatttgactttatagttcattcatgcaatgcaatgaaaatgaatttggttattagaaatgtgcaagtcaaatatattttgacgatttaatatcacacac |
14080639 |
T |
|
| Q |
116 |
ataaaataaaacatattttttgagaggataaaaacatttaaaattgtgatgttagatttgaaaaacttaataaattgaatgatatttttcagtttaagag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14080640 |
ataaaataaaacatattttttgagaggataaaaacatttaaaattgtgatgttagatttgaaaaacttaataaattgaatgatatttttcagtttaaggg |
14080739 |
T |
|
| Q |
216 |
attaaactattattttgcaaatttaagggattaattttgtcgatccttatattggaaagattaaaatgctgctgatttattttataaatgaagtacaaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14080740 |
attaaactattattttgcaaatttaagggattaattttgtcgatccttatattggaaagattaaaatgctgctgatttattttataaatgaagtacaaat |
14080839 |
T |
|
| Q |
316 |
atatattaaacattaatttaaggttatttgttttagttggtgaactaatgattct |
370 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14080840 |
atatattaaacattaatctaaggttgtttgttttagttggtgaactaatgattct |
14080894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 32462623 - 32462559
Alignment:
| Q |
152 |
tttaaaattgtgatgttagatttgaaaaacttaataaattgaatgatatttttcagtttaagaga |
216 |
Q |
| |
|
|||||||||||| ||||| |||||||||| | | |||||||| ||| || |||||||||||||| |
|
|
| T |
32462623 |
tttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagaga |
32462559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University