View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_high_4 (Length: 386)
Name: NF10133_high_4
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 52807611 - 52807241
Alignment:
| Q |
1 |
aagccatagaaactttgcatggaataaccaaacagttgaagaacctatgtttcaaagtcaatataacatggaaacaattatgatcatgattagaaatgga |
100 |
Q |
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| T |
52807611 |
aagccatagaaactttgcatggaataaccaaacagttcaagaacctatgtttcaaagtcaatatagcatggaaacaattatgatcatgattagaaatgga |
52807512 |
T |
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| Q |
101 |
acatacccctctaattttgcaacaacatttcttagaaataatgaaag---ccaaggtgcaggcaaagaaggtgttgttataggggtgaagggtgaggaac |
197 |
Q |
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| T |
52807511 |
acatacccctctaattttgcaacaacatttcttagaaataatgaaaggcgccaaggtgcaggcaaagaaggtgttgttataggggtgaaggatgaggaac |
52807412 |
T |
|
| Q |
198 |
aattttcttgcacacaactactttttcaaaaagaattaacaccaagtgatgttggtaaactcaataggcttgtcgtcccgaaaaaacatgcagttaccta |
297 |
Q |
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| T |
52807411 |
aattttcttgcacacaactactttttcaaaaagaattaacaccaagtgatgttggtaaactcaataggcttgtcgtcccgaaaaaacatgcagttaccta |
52807312 |
T |
|
| Q |
298 |
ttttcctttggtttgtggcaatgacgtggaagttgtgttttatgacaaactcatgcgattgtggaagtttc |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807311 |
ttttcctttggtttgtggcaatgacgtggaagttgtgttttatgacaaactcatgcgattgtggaagtttc |
52807241 |
T |
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