View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10133_high_8 (Length: 338)
Name: NF10133_high_8
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 41992794 - 41992472
Alignment:
| Q |
1 |
tatgtatagcctagccctttgctccttaaggactcctccaagtcctctactagatgatgatgatagccttcttttagagcctccaatagcacccatcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41992794 |
tatgtatagcctagccctttgctccttaaggactcctccaagtcctctactagatgatgatgatagccttcttttagagcctccaatagcacccatcttc |
41992695 |
T |
|
| Q |
101 |
attttttagagtcaactaatgttcaaactcttaggaaatgaaaaggtagttgagtt---tatgaaagacttgattttagaattgtggtttgtgatgggtt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41992694 |
attttttagagtcaactaatgttcaaactcttaggaaatgaaaaggtagttgagttgtgtatgaaagacttgattttagaattgtggtttgtgatgggtt |
41992595 |
T |
|
| Q |
198 |
cttatagaacttgaagtaatggtcccaacccacgttggtcttagtaaagaggcaccgatggggtataaaagggcgtgcaatgcctccaaaaccaccagac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41992594 |
cttatagaacttgaagtaatggtcccaacccacgttggtcttagtaaagaggcaccgatggggtatgaaagggcgtgcaatgcctccaaaaccaccagac |
41992495 |
T |
|
| Q |
298 |
aaacatcaaatggaccccacctt |
320 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41992494 |
aaacatcaaatggaccccacctt |
41992472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University