View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_1 (Length: 773)
Name: NF10133_low_1
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 18 - 756
Target Start/End: Original strand, 29201781 - 29202519
Alignment:
| Q |
18 |
gattctgatttgggtggttttgctggtgatttggtgggtactcttgaaaaaatacctgggtctcatcctgaatggaaagaggggttggaagatttgttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29201781 |
gattctgatttgggtggttttgctggtgatttggtgggtactcttgaaaaaatacctgggtctcatcctgaatggaaagaggggttggaagatttgttgg |
29201880 |
T |
|
| Q |
118 |
ttgttgctcgacaatgtgcaaagatgacagcggctgagttttggatcaactgtgaaactattgttcaaaaactagatgataaacgtcaagatataccggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29201881 |
ttgttgctcgacaatgtgcaaagatgacagcggctgagttttggatcaactgtgaaactattgttcaaaaactagatgataaacgtcaagatataccggt |
29201980 |
T |
|
| Q |
218 |
ggggatcctcaagcaagcacatacgcgcctgttgtttattctctctaggtgcactcgtctagtgcaattccagaaggaaagtgttaaagaacaagatcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29201981 |
ggggatcctcaagcaagcacatacgcgcctgttgtttattctctctaggtgcactcgtctagtgcaattccagaaggaaagtgttaaagaacaagatcac |
29202080 |
T |
|
| Q |
318 |
attcttggtcttcaccaactcagcgatcttggagtatattccgagcaaattatgaaggctgaagagagttgcggttttccacccagtgaccatgagatgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29202081 |
attcttggtcttcaccaactcagcgatcttggagtatattccgagcaaattatgaaggctgaagagagttgcggttttccacccagtgaccatgagatgg |
29202180 |
T |
|
| Q |
418 |
ctgagaagctgataaaaaagtcacatgggaaagagcaagacaaaccgattacaaaacaaagtcaagctgatcaacatgcaagtgttgtgattgataatgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29202181 |
ctgagaagctgataaaaaagtcacatgggaaagagcaagacaaaccgattacaaaacaaagtcaagctgatcaacatgcaagtgttgtgattgataatgt |
29202280 |
T |
|
| Q |
518 |
ggaagttactacggcaagtactgattcgactcctggaagcagctataagatggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29202281 |
ggaagttactacggcaagtactgattcgactcctggaagcagctataagatggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggt |
29202380 |
T |
|
| Q |
618 |
caagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcatgtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttctt |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29202381 |
caagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcatgtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttctt |
29202480 |
T |
|
| Q |
718 |
ggggatattggggagatcagcaaaatctattacatgatg |
756 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29202481 |
ggggatattggggagatcagcaaaatctattacatgatg |
29202519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 735; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 18 - 756
Target Start/End: Complemental strand, 12650106 - 12649368
Alignment:
| Q |
18 |
gattctgatttgggtggttttgctggtgatttggtgggtactcttgaaaaaatacctgggtctcatcctgaatggaaagaggggttggaagatttgttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12650106 |
gattctgatttgggtggttttgctggtgatttggtgggtactcttgaaaaaatacctgggtctcatcctgaatggaaagaggggttggaagatttgttgg |
12650007 |
T |
|
| Q |
118 |
ttgttgctcgacaatgtgcaaagatgacagcggctgagttttggatcaactgtgaaactattgttcaaaaactagatgataaacgtcaagatataccggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12650006 |
ttgttgctcgacaatgtgcaaagatgacagcggctgagttttggatcaactgtgaaactattgttcaaaaactagatgataaacgtcaagatataccggt |
12649907 |
T |
|
| Q |
218 |
ggggatcctcaagcaagcacatacgcgcctgttgtttattctctctaggtgcactcgtctagtgcaattccagaaggaaagtgttaaagaacaagatcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12649906 |
ggggatcctcaagcaagcacatacgcgcctgttgtttattctctctaggtgcactcgtctagtgcaattccagaaggaaagtgttaaagaacaagatcac |
12649807 |
T |
|
| Q |
318 |
attcttggtcttcaccaactcagcgatcttggagtatattccgagcaaattatgaaggctgaagagagttgcggttttccacccagtgaccatgagatgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
12649806 |
attcttggtcttcaccaactcagcgatcttggagtatattccgagcaaattatgaaggctgaagagagttgcggttttccacctagtgaccatgagatgg |
12649707 |
T |
|
| Q |
418 |
ctgagaagctgataaaaaagtcacatgggaaagagcaagacaaaccgattacaaaacaaagtcaagctgatcaacatgcaagtgttgtgattgataatgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12649706 |
ctgagaagctgataaaaaagtcacatgggaaagagcaagacaaaccgattacaaaacaaagtcaagctgatcaacatgcaagtgttgtgattgataatgt |
12649607 |
T |
|
| Q |
518 |
ggaagttactacggcaagtactgattcgactcctggaagcagctataagatggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12649606 |
ggaagttactacggcaagtactgattcgactcctggaagcagctataagatggcttcttggagaaagcttccatctgctgcggagaaaaatcgtgtaggt |
12649507 |
T |
|
| Q |
618 |
caagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcatgtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttctt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12649506 |
caagatgcagtaaaagatgaaaatgctgaaaactgggatactttgtcatgtcaccctgatcaacattcacagccgtcatctagaacgcggaggccttctt |
12649407 |
T |
|
| Q |
718 |
ggggatattggggagatcagcaaaatctattacatgatg |
756 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12649406 |
ggggatattggggagatcagcaaaatctattacatgatg |
12649368 |
T |
|
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