View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10133_low_11 (Length: 368)

Name: NF10133_low_11
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10133_low_11
NF10133_low_11
[»] chr5 (2 HSPs)
chr5 (73-358)||(29610319-29610615)
chr5 (174-357)||(29584408-29584591)
[»] chr3 (1 HSPs)
chr3 (186-255)||(25129001-25129070)
[»] chr7 (3 HSPs)
chr7 (87-119)||(29363627-29363659)
chr7 (87-119)||(43854960-43854992)
chr7 (87-119)||(46281061-46281093)
[»] chr6 (2 HSPs)
chr6 (88-124)||(4163273-4163309)
chr6 (88-124)||(4224894-4224930)
[»] chr4 (1 HSPs)
chr4 (88-124)||(46714905-46714941)
[»] chr2 (3 HSPs)
chr2 (87-119)||(2790357-2790389)
chr2 (87-119)||(33503117-33503149)
chr2 (87-119)||(43259954-43259986)
[»] chr1 (1 HSPs)
chr1 (87-119)||(51957315-51957347)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 73 - 358
Target Start/End: Complemental strand, 29610615 - 29610319
Alignment:
Q  73 ccacaagagatatgtagtagataagttcaaataagccaatacaaacatgcctttgtcgatagctaaattcggaaagatgcaaattaaaggttaaaat--- 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  29610615 ccacaagagatatgtagtagataagttcaaataagccaatacaaacatgcctttgtcgatagctaaattcggaaagatgcaaattaaaggttaaaataaa 29610516  T
Q  170 --------gaagaggaacagcacgaacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaatagcat 261  Q
            ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29610515 aaagataagaagaggaacagcacgaacctagttgctccaaggccaacattatgaggaaatatagtagtaccatagacgttattgttaccatgaatagcat 29610416  T
Q  262 cagtacaataaatgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttctt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610415 cagtacaataaatgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttctt 29610319  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 357
Target Start/End: Original strand, 29584408 - 29584591
Alignment:
Q  174 aggaacagcacgaacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaatagcatcagtacaataaa 273  Q
    ||||||| ||| ||||| || ||||| ||| |||| |||||||||||||| || ||||| ||||| || || |||||||||| |||||| || | ||| |    
T  29584408 aggaacaccaccaaccttgtagctccgagggcaacattgtgaggaaatatggtcgtaccgtagacattattattaccatgaacagcatcggtcccatata 29584507  T
Q  274 tgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttct 357  Q
    ||||||||||||||||||| || ||||| |||| ||||||||||||||| |||| ||||||||||||||| || ||||||||||    
T  29584508 tgattggtatgcctaaccgcgattcaagggccaacttctgaaacccgtctaccaaatcagcccaatcagatgatacttccttct 29584591  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 25129001 - 25129070
Alignment:
Q  186 aacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaa 255  Q
    |||||||| |||||||||||||| |||||||||||||| |||| |||||||||  | || ||||||||||    
T  25129001 aacctagtagctccaaggccaacattgtgaggaaatatggtagcaccatagacactattattaccatgaa 25129070  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 29363627 - 29363659
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    |||||||||||||||||||||||||| ||||||    
T  29363627 tagtagataagttcaaataagccaatccaaaca 29363659  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 43854992 - 43854960
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    |||||||||||||||||||||||||| ||||||    
T  43854992 tagtagataagttcaaataagccaattcaaaca 43854960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 46281093 - 46281061
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    |||||||||||||||||||||||||| ||||||    
T  46281093 tagtagataagttcaaataagccaatccaaaca 46281061  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 4163273 - 4163309
Alignment:
Q  88 agtagataagttcaaataagccaatacaaacatgcct 124  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4163273 agtagataagctcaaataagccaatccaaacatgcct 4163309  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 4224894 - 4224930
Alignment:
Q  88 agtagataagttcaaataagccaatacaaacatgcct 124  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4224894 agtagataagctcaaataagccaatccaaacatgcct 4224930  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 46714941 - 46714905
Alignment:
Q  88 agtagataagttcaaataagccaatacaaacatgcct 124  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  46714941 agtagataagttcaaataagccaattcaaacaggcct 46714905  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 2790357 - 2790389
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    |||||||||||||||||||||||||| ||||||    
T  2790357 tagtagataagttcaaataagccaatccaaaca 2790389  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 33503117 - 33503149
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    ||||||||||| |||||||||||||||||||||    
T  33503117 tagtagataagctcaaataagccaatacaaaca 33503149  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 43259954 - 43259986
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    |||||||||||||||||||||||||| ||||||    
T  43259954 tagtagataagttcaaataagccaatccaaaca 43259986  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 51957347 - 51957315
Alignment:
Q  87 tagtagataagttcaaataagccaatacaaaca 119  Q
    |||||||||||||||||||||| ||||||||||    
T  51957347 tagtagataagttcaaataagctaatacaaaca 51957315  T

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