View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10133_low_12 (Length: 362)

Name: NF10133_low_12
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10133_low_12
NF10133_low_12
[»] chr3 (14 HSPs)
chr3 (155-344)||(26060274-26060463)
chr3 (155-344)||(4357702-4357891)
chr3 (155-344)||(21633640-21633830)
chr3 (151-344)||(26059408-26059601)
chr3 (155-344)||(26060709-26060900)
chr3 (155-344)||(4358137-4358329)
chr3 (155-344)||(4357265-4357456)
chr3 (151-344)||(4358564-4358758)
chr3 (155-344)||(26059836-26060028)
chr3 (151-344)||(21634503-21634700)
chr3 (155-280)||(21633280-21633405)
chr3 (155-344)||(21634076-21634268)
chr3 (288-344)||(21632831-21632887)
chr3 (79-121)||(44006411-44006453)
[»] chr1 (24 HSPs)
chr1 (155-344)||(41777711-41777900)
chr1 (155-344)||(37397966-37398155)
chr1 (155-344)||(4291700-4291889)
chr1 (150-344)||(33209393-33209586)
chr1 (155-261)||(50987662-50987768)
chr1 (155-344)||(37397529-37397720)
chr1 (155-344)||(4291262-4291454)
chr1 (155-344)||(4292135-4292326)
chr1 (151-344)||(37398829-37399024)
chr1 (155-344)||(7715957-7716149)
chr1 (155-344)||(33208954-33209147)
chr1 (151-344)||(41778573-41778770)
chr1 (151-344)||(4290841-4291037)
chr1 (155-344)||(37398401-37398593)
chr1 (155-344)||(41777286-41777476)
chr1 (155-344)||(41778146-41778338)
chr1 (151-344)||(7715523-7715722)
chr1 (155-344)||(50988014-50988206)
chr1 (151-344)||(50988441-50988637)
chr1 (155-344)||(22521703-22521892)
chr1 (26-74)||(33216442-33216490)
chr1 (167-238)||(11159851-11159922)
chr1 (183-344)||(22521279-22521441)
chr1 (79-158)||(33216312-33216392)
[»] chr5 (9 HSPs)
chr5 (155-344)||(20400465-20400654)
chr5 (155-344)||(34997015-34997203)
chr5 (155-280)||(17842854-17842979)
chr5 (151-344)||(20400037-20400230)
chr5 (151-344)||(34997877-34998070)
chr5 (155-344)||(34996577-34996769)
chr5 (151-344)||(17843214-17843406)
chr5 (155-344)||(20400901-20401092)
chr5 (155-344)||(34997449-34997642)
[»] chr4 (14 HSPs)
chr4 (155-344)||(37086481-37086670)
chr4 (159-344)||(36032601-36032785)
chr4 (151-344)||(18122460-18122654)
chr4 (155-344)||(36033031-36033222)
chr4 (151-344)||(36031728-36031924)
chr4 (151-344)||(37087336-37087532)
chr4 (159-344)||(37086044-37086231)
chr4 (155-344)||(36032159-36032351)
chr4 (155-338)||(37086922-37087108)
chr4 (155-190)||(18122190-18122225)
chr4 (79-121)||(2333846-2333888)
chr4 (79-121)||(40729929-40729971)
chr4 (79-121)||(43036493-43036535)
chr4 (79-115)||(17045033-17045069)
[»] chr7 (5 HSPs)
chr7 (155-344)||(46365038-46365228)
chr7 (155-344)||(46364600-46364792)
chr7 (155-344)||(46365474-46365665)
chr7 (151-344)||(46364171-46364365)
chr7 (26-74)||(47317279-47317327)
[»] scaffold0517 (2 HSPs)
scaffold0517 (151-344)||(9052-9247)
scaffold0517 (155-344)||(9493-9685)
[»] chr8 (1 HSPs)
chr8 (151-344)||(44840762-44840957)
[»] chr2 (1 HSPs)
chr2 (155-344)||(29589062-29589253)
[»] chr6 (3 HSPs)
chr6 (151-280)||(9452115-9452244)
chr6 (160-344)||(18754180-18754366)
chr6 (155-199)||(18754594-18754638)
[»] scaffold0146 (1 HSPs)
scaffold0146 (79-117)||(32348-32386)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 26060274 - 26060463
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060274 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 26060373  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26060374 aatgataatttatcccgtgtattttatttttttctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttatgagggttcaat 26060463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 4357891 - 4357702
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4357891 aattaaattgaggtgatgatgttataaatagtttaaacgttttaacataaacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 4357792  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4357791 aatgataatttatcccgtgtattttatttttttctgaaagtttagtcaatgttcgtttctcccgtacattttagtttacgagggttcaat 4357702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 21633830 - 21633640
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21633830 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 21633731  T
Q  255 aatgataatttatcctgtgta-ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||| ||||        |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  21633730 aatgataatttatcccgtgtattttttttttcttctgaaagtttagtcaatgtttgtttctcccgtgcattttagtttatgagggttcaat 21633640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 26059408 - 26059601
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  26059408 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 26059507  T
Q  251 agtcaatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||| |||| ||||||||||        ||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  26059508 actcaatgataatatatcttgtgtattttttttttttctgaaagattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 26059601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 26060709 - 26060900
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  26060709 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 26060808  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  26060809 aatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 26060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 4358329 - 4358137
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  4358329 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 4358230  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  4358229 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcgtttatcccgtgcattttagtttatgaggggtcaat 4358137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 4357456 - 4357265
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  4357456 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 4357357  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||||    
T  4357356 aatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccatgcatattagtttatgagggttcaat 4357265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 4358758 - 4358564
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  4358758 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 4358659  T
Q  251 agtcaatgataatttatcctgtgta-ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| |||||| ||||        ||||||  ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  4358658 agtcaatgataatatatcttgtgtatttttttttccttctgaaatattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 4358564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 26059836 - 26060028
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  26059836 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 26059935  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  26059936 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 26060028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 21634700 - 21634503
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    ||||||||||| |||||||||||| ||||||| ||||||||  ||||| || ||| |||| ||||| |||||||||||| |||||||| || ||||| ||    
T  21634700 ttataattgaactgaggtgatgatattataaacagtttaaatgttttagcatgaacaattattataaaggacaacttgttgtgtaaatcaaagttagttt 21634601  T
Q  251 agtcaatgataatttatcctgtgta----ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| ||||||    |||||       ||||||| ||||||||||||| ||| |||| |||||||||||| || ||||||||||    
T  21634600 agtcaatgataatatatcttgtgtattttttttatttttttctgaaagattagtcaatgttcatttatcccatgcattttagttcactagggttcaat 21634503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 21633405 - 21633280
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| |  ||||||| |||||| ||| | |||||||| |||||||| ||||||    
T  21633405 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagattttataaaggacagcttattgtgtaaatcaaggttagtttagtc 21633306  T
Q  255 aatgataatttatcctgtgtatttta 280  Q
    ||||||||||||||| ||||||||||    
T  21633305 aatgataatttatcccgtgtatttta 21633280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 21634268 - 21634076
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||| || | |||||||| |||||||||| | | |||||| |||||||| ||||||    
T  21634268 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcagtaacagtttttataaaggacaacttattgcgtaaatcaaggttagtttagtc 21634169  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||  ||||| ||||          || |||||||||||||||||| ||| || |||||||||||||||| ||||| |||||    
T  21634168 attgataatttatctcgtgtactttattttatttttctcaaagtttagtcaatgttcatttatcgcgtgcattttagtttatgaggggtcaat 21634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 21632887 - 21632831
Alignment:
Q  288 ctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  21632887 ctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 21632831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 44006453 - 44006411
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagtttttaatgt 121  Q
    ||||||||||||||| |||||||||||||||| |||| |||||    
T  44006453 gcatttaagtattttacttatgtcattgtgaaattttcaatgt 44006411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 41777900 - 41777711
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  41777900 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtt 41777801  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41777800 aatgataatttatcccgtgtattttatttttttctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttatgagggttcaat 41777711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 37398155 - 37397966
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37398155 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttgtcgtgtaaataaaggttagtttagtc 37398056  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37398055 aatgataatttatctcgtgtattttatttttttctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttatgagggttcaat 37397966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 4291700 - 4291889
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4291700 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaagaacaatttttatacaggacaacttgtcgtgtaaataaatgttagcttagtc 4291799  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| || |||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4291800 aatgataatttatcccgtatattttatttttttctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttatgagggttcaat 4291889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 150 - 344
Target Start/End: Complemental strand, 33209586 - 33209393
Alignment:
Q  150 attataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagct 249  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||||||    
T  33209586 attagaattgaattgaggtgatgatgttataaatagtttaaacgttttaactgggacaatttttatacaggacaacttgtcgtgtaaataaaggttagct 33209487  T
Q  250 tagtcaatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    |||||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  33209486 tagtcaatgataatttatcccgtgtatttta-ttttttctgaaagtttagtcaatgttcgtttctcctttgcattttagtttatgagggttcaat 33209393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 50987768 - 50987662
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50987768 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaaaaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 50987669  T
Q  255 aatgata 261  Q
    |||||||    
T  50987668 aatgata 50987662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 37397720 - 37397529
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||  || |||||||||| |||||||||| | |||||||| |||||||| ||||||    
T  37397720 aattgaattgaggtgatgatgttataaatagtttaaatattttagcataaacaatttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 37397621  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| |||||||||| ||| |||| |||||||||||    
T  37397620 aatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattaatttatgagggttcaat 37397529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 4291262 - 4291454
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  4291262 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacattttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 4291361  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  4291362 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 4291454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 4292135 - 4292326
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| || ||| | |||||||| |||||||||| | ||| |||| |||||||| ||||||    
T  4292135 aattgaattgaggtgatgatgttataaataatttaaatgttttagcatgaacagtttttataaaggacaacttattgtgcaaatcaaggttagtttagtc 4292234  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||||||||||||||         || |||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  4292235 aatgataatttatcctgtgtattttattttattttctaaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 4292326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 37399024 - 37398829
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  37399024 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 37398925  T
Q  251 agtcaatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| || | |||||||||||         ||| ||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  37398924 agtcaatgataatatagcttgtgtattttattttattttctggaagattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 37398829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 7715957 - 7716149
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| | |||| ||| |||||||| ||||||    
T  7715957 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattgtgtgaatcaaggttagtttagtc 7716056  T
Q  255 aatgataatttatcctgtgtattt---tannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||   |        ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  7716057 aatgataatttatcccgtgtatttttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 7716149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 33209147 - 33208954
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| |  ||||||| |||||||| |||||     
T  33209147 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattctgtaaatcaaggttagtttagtg 33209048  T
Q  255 aatgataatttatcctgtgtatttta----nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||           ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  33209047 aatgataatttatcccgtgtattttattttatattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 33208954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 41778770 - 41778573
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| ||||||||||| ||||| ||    
T  41778770 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaataaaagttagttt 41778671  T
Q  251 agtcaatgataatttatcctgtgta----ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| ||||||    ||||        ||||||| ||||||||||||| ||| |||| |||||||||||||| |||||| ||||    
T  41778670 agtcaatgataatatatcttgtgtattttttttttctttttctgaaagattagtcaatgttcatttatcccatgcattttagtttatgagggtccaat 41778573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 4290841 - 4291037
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  4290841 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 4290940  T
Q  251 agtcaatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| || ||||||||          ||||||| ||||||||||||| ||| || |||| ||||||||||| |||||||||||    
T  4290941 agtcaatgataatatatcttgggtattttattttatttttctgaaagattagtcaatgttcatttatctcgtggattttagtttatgagggttcaat 4291037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 37398593 - 37398401
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||| ||||||||||||||||||||||||||||  ||||| ||||||   |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  37398593 aattgaatcgaggtgatgatgttataaatagtttaaatgttttagcaggaactgtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 37398494  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  37398493 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 37398401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 41777476 - 41777286
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataattttt-atacaggacaacttgtcgtgtaaataaaggttagcttagt 253  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | ||||| ||| |||||||||| | |||||||| |||||||| |||||    
T  41777476 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagttttttataaaggacaacttattgtgtaaatcaaggttagtttagt 41777377  T
Q  254 caatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    |||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| |||||||||| ||||||||  ||||||||||    
T  41777376 caatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagttta--agggttcaat 41777286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 41778338 - 41778146
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||||||||| | | |||||| |||||||| ||||||    
T  41778338 aattgaattgaggtgatgatgttataaatagtttaaatgttttaccaggaacagtttttataaaggacaacttattgcgtaaatcaaggttagtttagtc 41778239  T
Q  255 aatgataatttatcctgtgtatt---ttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| |||||||   ||        || |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  41778238 attgataatttatcccgtgtatttgatttgatttttctcaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 41778146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 7715523 - 7715722
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  7715523 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 7715622  T
Q  251 ag----tcaatgataatttatcctgtgta--ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||    ||||||||||| |||| ||||||  ||||        ||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  7715623 agtcaatcaatgataatatatcttgtgtatttttttttcttttctgaaagattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 7715722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 50988206 - 50988014
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||| | |||||||||| | |||||||| || ||||| ||||||    
T  50988206 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacagtttttacaaaggacaacttattgtgtaaatcaatgttagtttagtc 50988107  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||| ||| || |||||||||||||||| ||||| |||||    
T  50988106 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcatttatcacgtgcattttagtttaagaggggtcaat 50988014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 50988637 - 50988441
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||| ||| |||||||| || ||||| ||    
T  50988637 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacatgttgtgtaaatcaaagttagttt 50988538  T
Q  251 agtcaatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| |||||||||||          ||||||| ||||| ||||||| ||| ||||||| |||||| |||| |||||||||||    
T  50988537 agtcaatgataatatatcttgtgtattttattttatttttctgaaagattagtaaatgttcatttatcccgtggattttaatttatgagggttcaat 50988441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 22521892 - 22521703
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||| || |||||||||||||| ||||| |||||| | |||||||| | |||||||||| || ||||| || ||||| ||||||    
T  22521892 aattgaattgaggtgatgatattttaaatagtttaaacattttagcaggaacattttttataaatgacaacttgttgtttaaatcaaagttagtttagtc 22521793  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||| || ||||| ||||| ||| |       |||||| ||||||||||||||  |||||  |||||||||||||||  ||||||||||    
T  22521792 aatgacaacttatcatgtgtttttgatttatttctgaaattttagtcaatgttcacttctcttgtgcattttagtttatcagggttcaat 22521703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 33216490 - 33216442
Alignment:
Q  26 gaaagagaaatagatggagaaaatgtacaccaataaattgaagaaagga 74  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||    
T  33216490 gaaagagaaatagatggagagaacgtacaccaataaattgaagaaagga 33216442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 11159851 - 11159922
Alignment:
Q  167 gtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaat 238  Q
    |||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| ||||||||    
T  11159851 gtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaat 11159922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 344
Target Start/End: Complemental strand, 22521441 - 22521279
Alignment:
Q  183 tagtttaaaccttttaacaggaataattttta-tacaggacaacttgtcgtgtaaataaaggttagcttagtcaatgataatttatcctgtgtattttan 281  Q
    |||||||||  ||||| || ||| |||||||| || | |||||||| || | |||||||||||||| ||||||||||| || |||||| |||||||| |     
T  22521441 tagtttaaaagttttagcatgaacaatttttaataaatgacaacttatcctataaataaaggttagtttagtcaatgacaacttatcccgtgtatttgat 22521342  T
Q  282 nnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
          |||||| |||||||||| |||  || || |||||| ||||| |||  ||||||||||    
T  22521341 ttatttctgaaattttagtcaattttcaattatctcgtgcaatttagattataagggttcaat 22521279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 33216392 - 33216312
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagtttttaatgt-nnnnnnncaattttcaatgttaaaatgtattataatt 158  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||        |||||||||||||||||||| |||| ||||    
T  33216392 gcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaaaaacaattttcaatgttaaaatgcattagaatt 33216312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 20400465 - 20400654
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20400465 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttatcgtgtaaataaaggttagcttagtc 20400564  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||       ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  20400565 aatgataatttatcccgtgtattttatttttttctgaaagtttagtaaatgttcgtttctcccgtgcattttactttatgagggttcaat 20400654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 34997203 - 34997015
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  34997203 aattgaattgaggtgatgatgttataaatagtttaaaagttttaacaggaacaatttttatacaggacaacttgtcgtgtaaatgaaggttagcttagtc 34997104  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34997103 aatgataatttatcccgtgtatttta-ttttttctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttatgagggttcaat 34997015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 17842979 - 17842854
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17842979 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttgtcgtgtaaataaaggttagtttagtc 17842880  T
Q  255 aatgataatttatcctgtgtatttta 280  Q
    ||||||||||||||| ||||||||||    
T  17842879 aatgataatttatcccgtgtatttta 17842854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 20400037 - 20400230
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || |||||||||||||| |||||||||||| |||||||| || ||||| ||    
T  20400037 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaataatttttataaaggacaacttgttgtgtaaatcaaagttagttt 20400136  T
Q  251 agtcaatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||| |||| ||||||||||        ||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  20400137 actcaatgataatatatcttgtgtatttttttttcttctgaaagattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 20400230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 34998070 - 34997877
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| ||  || |||||||||| |||||||||||| |||||||| || ||||| ||    
T  34998070 ttataattgaattgaggtgatgatattataaatagtttaaatattttagcataaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 34997971  T
Q  251 agtcaatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| ||||||||||        ||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  34997970 agtcaatgataatatatcttgtgtattttttttctttctgaaagattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 34997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 34996769 - 34996577
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  34996769 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 34996670  T
Q  255 aatgataatttatcctgtgtattt---tannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||   |        ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  34996669 aatgataatttatcccgtgtatttttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 34996577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 17843406 - 17843214
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || || || ||    
T  17843406 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagtaagttt 17843307  T
Q  251 agtcaatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| ||||||||||        ||||||| ||||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  17843306 agtcaatgataatatatcttgtgtatttt-ttttcttctgaaagattagtcaatgttcatttatcccgtgtattttagtttatgagggttcaat 17843214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 20400901 - 20401092
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| ||||||| || | |||||||| |||| ||| ||||||    
T  20400901 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaatttattgtgtaaatcaaggatagtttagtc 20401000  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||         ||||||||||||| ||||||| ||| |||||||||| |||||||| |||||||||||    
T  20401001 aatgataatttatcccgtgtattttattttattttctgaaagtttagtgaatgttcatttatcccgtgcatattagtttatgagggttcaat 20401092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 34997642 - 34997449
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  34997642 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 34997543  T
Q  255 aatgataatttatcctgtgtatt----ttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||  |||||||    ||        || |||||||||||||||||| ||| | ||||||||||||||||| ||||| |||||    
T  34997542 attgataatttatcacgtgtattttgattttatttttctcaaagtttagtcaatgttcatttattccgtgcattttagtttatgaggggtcaat 34997449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 37086670 - 37086481
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37086670 aattgaattgaggtgatgatgttataaatactttaaacgttttaacagaaacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 37086571  T
Q  255 aatgataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||       |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  37086570 aatgataatttatcccgtgtattttatttttttctgaaagtttagtcaatgttcgtttctctcgtgcattttagtttatgagggttcaat 37086481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 159 - 344
Target Start/End: Original strand, 36032601 - 36032785
Alignment:
Q  159 gaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtcaatg 258  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36032601 gaattgaggtggtgatgttataaatagtttaaacattttaacag-aacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtcaatg 36032699  T
Q  259 ataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36032700 ataatttatcccgtgtattttatttttttctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttatgagggttcaat 36032785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 18122654 - 18122460
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  18122654 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 18122555  T
Q  251 agtcaatgataatttatcctgtgta-ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| |||||| ||||        ||||||  ||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  18122554 agtcaatgataatatatcttgtgtatttttttttccttctgaaatattagtcaatgttcatttatcccgtgcattttagtttatgagggttcaat 18122460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 36033031 - 36033222
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| || ||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  36033031 aattgaattgaggtgatgatgttataaataatttaaatattttagcatgaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 36033130  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||         ||||||||||||||||||||  ||| |||||||||| |||||||| |||||||||||    
T  36033131 aatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgtttatttatcccgtgcatattagtttatgagggttcaat 36033222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 36031728 - 36031924
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||| ||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  36031728 ttataattgaattgaggtgatgatattataaacagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 36031827  T
Q  251 agtcaatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| |||||||||||          ||||||| ||||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  36031828 agtcaatgataatatatcttgtgtattttattttatttttctgaaagattagtcaatgttcatttatcccgtggattttagtttatgagggttcaat 36031924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 151 - 344
Target Start/End: Complemental strand, 37087532 - 37087336
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||| || ||||| ||    
T  37087532 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagttt 37087433  T
Q  251 agtcaatgataatttatcctgtgta---ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| ||||||   ||||        ||||||| ||||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  37087432 agtcaatgataatatatcttgtgtattttttttttcttttctgaaagattagtcaatgttcatttatcccgtgcattttagtttataagggttcaat 37087336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 159 - 344
Target Start/End: Complemental strand, 37086231 - 37086044
Alignment:
Q  159 gaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtcaatg 258  Q
    |||||||||||||||||||||||||||||||||  ||||| || ||| | |||||||| |||| ||||| | |||||||| || ||||| ||||||||||    
T  37086231 gaattgaggtgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggataacttattgtgtaaatcaatgttagtttagtcaatg 37086132  T
Q  259 ataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    |||||||||||||| |||||||         ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  37086131 ataatttatcctgtatattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 37086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 36032159 - 36032351
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||||||| | | |||||||| |||||||| ||||||    
T  36032159 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacagtttttataaaggacaacctattgtgtaaatcaaggttagtttagtc 36032258  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | |||||||||||||  |||||||||          || |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  36032259 attgataatttatcccttgtattttattttatttttctcaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 36032351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 338
Target Start/End: Complemental strand, 37087108 - 37086922
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||||||||| | ||| |||| || ||||| ||||||    
T  37087108 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacagtttttataaaggacaacttattgtgcaaatcaatgttagtttagtc 37087009  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgaggg 338  Q
    | |||||||||||||  |||||||||          || |||||||||||||||||| ||| ||| ||||||||||||||| |||||    
T  37087008 attgataatttatcccatgtattttattttatttttctcaaagtttagtcaatgttcatttatcctgtgcattttagtttatgaggg 37086922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 18122225 - 18122190
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaa 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  18122225 aattgaattgaggtgatgatgttataaatagtttaa 18122190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 2333846 - 2333888
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagtttttaatgt 121  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||    
T  2333846 gcatttaagtattttacttgtgtcattgtgaagttttttatgt 2333888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 40729929 - 40729971
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagtttttaatgt 121  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||    
T  40729929 gcatttaagtattttacttgtgtcattgtgaagttttcaatgt 40729971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 43036493 - 43036535
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagtttttaatgt 121  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||    
T  43036493 gcatttaagtattttacttgtgtcattgtgaagttttttatgt 43036535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 17045069 - 17045033
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagtttt 115  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  17045069 gcatttaagtattttacttgtgtcattgtgaagtttt 17045033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 46365038 - 46365228
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46365038 aattgaattgaggtgatgatgttataaatagtttaaacgttttaacaggaacaatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 46365137  T
Q  255 aatgataatttatcctgtgta-ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||| ||||        ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  46365138 aatgataatttatcccgtgtatttttttttctttctgaaagtttagtaaatgttcgtttctcccgtgcattttagtttatgagggttcaat 46365228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 46364600 - 46364792
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| |||||||||| |||||||||| | |||||||| |||||||| ||||||    
T  46364600 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaacaatttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 46364699  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  46364700 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 46364792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 46365474 - 46365665
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||| ||||||||||||||||||||||||  ||||| || ||| | |||||||| |||||||||| | |||||||| |||||||| ||||||    
T  46365474 aattgaattgagatgatgatgttataaatagtttaaatgttttagcatgaacagtttttataaaggacaacttattgtgtaaatcaaggttagtttagtc 46365573  T
Q  255 aatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  46365574 aatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 46365665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 46364171 - 46364365
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||| ||||||||||||||| ||||||||||||||||  ||||| || ||| |||||||||| |||||||||||| |||||||  || ||||| ||    
T  46364171 ttataattaaattgaggtgatgatattataaatagtttaaatgttttagcatgaacaatttttataaaggacaacttgttgtgtaaaccaaagttagttt 46364270  T
Q  251 agtcaatgataatttatcctgtgta-ttttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||| |||| |||||| ||||        ||||||| ||||||||||||| ||| |||||||||||||| ||||  ||||||||||    
T  46364271 actcaatgataatatatcttgtgtatttttttcttcttctgaaagattagtcaatgttcatttatcccgtgcattttaatttatcagggttcaat 46364365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 47317327 - 47317279
Alignment:
Q  26 gaaagagaaatagatggagaaaatgtacaccaataaattgaagaaagga 74  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||    
T  47317327 gaaagagaaatagatggagagaacgtacaccaataaattgaagaaagga 47317279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 9052 - 9247
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||| |||||| |||||||||| |||||||||||| |||||||| |||||||| ||    
T  9052 ttataattgaattgaggtgatgatattataaatagtttaaatgttttagcaggaacaatttttataaaggacaacttgttgtgtaaatcaaggttagttt 9151  T
Q  251 agtcaatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  9152 agtcaatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcattttagtttatgaggggtcaat 9247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 9493 - 9685
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaa-caggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagt 253  Q
    |||||||||||||||||||||||||||||||||||||| |||| | ||  || |||||||||| |||||||||| | |||||||| |||||||| |||||    
T  9493 aattgaattgaggtgatgatgttataaatagtttaaacgtttttagcataaacaatttttataaaggacaacttattgtgtaaatcaaggttagtttagt 9592  T
Q  254 caatgataatttatcctgtgtatttta--nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    |||||||||||||||| ||||||||||         ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  9593 caatgataatttatcccgtgtattttattttattttctgaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 9685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 44840762 - 44840957
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||| ||||||| ||||||||||||||||  |||||||| ||| |||||||||| |||||||||||| |||||||| || ||||||||    
T  44840762 ttataattgaattgagatgatgatattataaatagtttaaatgttttaacatgaacaatttttataaaggacaacttgttgtgtaaatcaaagttagctt 44840861  T
Q  251 agtcaatgataatttatcctgtgtattttannnnnnnc---tgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    ||||||||||||| |||| |||||||||||       |   |||||| ||||||||||||| ||| ||||||||| ||||| ||| |||||||||||    
T  44840862 agtcaatgataatatatcttgtgtattttatttttttcttttgaaagattagtcaatgttcatttatcccgtgcagtttag-ttatgagggttcaat 44840957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 29589062 - 29589253
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtc 254  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||||  | ||||||| |||||||||| | |||||||| || ||||| ||||||    
T  29589062 aattgaattgaggtgatgatgttataaatagtttaaatgttttagcaggaa-cagttttataaaggacaacttattgtgtaaatcaatgttagtttagtc 29589160  T
Q  255 aatgataatttatcctgtgtatttta---nnnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    | ||||||||||||| ||||||||||          || |||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  29589161 attgataatttatcccgtgtattttattttatttttctcaaagtttagtcaatgttcatttatcccgtgcatattagtttatgagggttcaat 29589253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 9452244 - 9452115
Alignment:
Q  151 ttataattgaattgaggtgatgatgttataaatagtttaaaccttttaacaggaataatttttatacaggacaacttgtcgtgtaaataaaggttagctt 250  Q
    |||||||||||||||||||| ||| ||||||||||||||||  ||||| || ||| |||||||||| |||| ||||||| |||||||| || ||||| ||    
T  9452244 ttataattgaattgaggtgacgatattataaatagtttaaatgttttagcatgaacaatttttataaaggagaacttgttgtgtaaatcaaagttagttt 9452145  T
Q  251 agtcaatgataatttatcctgtgtatttta 280  Q
    ||||||||||||| |||| |||||||||||    
T  9452144 agtcaatgataatatatcttgtgtatttta 9452115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 344
Target Start/End: Original strand, 18754180 - 18754366
Alignment:
Q  160 aattgaggtgatgatgttataaatagtttaaaccttttaac--aggaataatttttatacaggacaacttgtcgtgtaaataaaggttagcttagtcaat 257  Q
    ||||||||||||||| || |||||||||||||| || ||    |  |||||||||| |  | ||||||||||| ||||||| |||||| | || |||| |    
T  18754180 aattgaggtgatgatattctaaatagtttaaacattgtagataaaaaataatttttgtgaatgacaacttgtcctgtaaatcaaggttggtttcgtcagt 18754279  T
Q  258 gataatttatcctgtgtattttannnnnnnctgaaagtttagtcaatgttcgtttctcccgtgcattttagtttacgagggttcaat 344  Q
    || || |||||| ||||||||||       ||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||    
T  18754280 gacaacttatcccgtgtattttatttatttctgaaagtttagtcaatgttcatttatcccgtgcattttagtttacgaagattcaat 18754366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 18754594 - 18754638
Alignment:
Q  155 aattgaattgaggtgatgatgttataaatagtttaaaccttttaa 199  Q
    ||||||||||| |||||||| || |||||||||||||| ||||||    
T  18754594 aattgaattgaagtgatgatattctaaatagtttaaacgttttaa 18754638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 32348 - 32386
Alignment:
Q  79 gcatttaagtattttccttatgtcattgtgaagttttta 117  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  32348 gcatttaagtattttacttgtgtcattgtgaagttttta 32386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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