View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_17 (Length: 337)
Name: NF10133_low_17
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 44333106 - 44332783
Alignment:
| Q |
1 |
aacaagatatgagaaatattactgattttagattaccttcttcacagggaaactcatcatcaggtacaatattgctttcattttctttttcttacattta |
100 |
Q |
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| T |
44333106 |
aacaagatatgagaaatattgctgattttagattaccttcttcacagggaaactcatcatcaggtacaatattgctttcattttctttttcttacattta |
44333007 |
T |
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| Q |
101 |
cctacacaattgcattatcatctttatcttaaataattgacataagatttccatcctcctttttggtaaacnnnnnnnnnctaaatttaatgttgaccaa |
200 |
Q |
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| T |
44333006 |
cctacacaattgcattatcatctttatcttaaataattgacataagatttccatcctcctttttggtaaac-ttttttttctaaatttaatgttgaccaa |
44332908 |
T |
|
| Q |
201 |
aattcattcaacttgtttttcaaatatggtaaatgcaacaatctatgaaaaattagtattaataataatccccttaaatttcacatgaccaaaacatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44332907 |
aattcattcaacttgtttttcaaatatggtaaatgcaacaatctatgaaaaattagtattaataataatccccttaaatttcacatgaccaaaacatgtt |
44332808 |
T |
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| Q |
301 |
attctaagtgcaacactgatgtcca |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
44332807 |
attctaagtgcaacactgatgtcca |
44332783 |
T |
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