View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10133_low_2 (Length: 524)

Name: NF10133_low_2
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10133_low_2
NF10133_low_2
[»] chr7 (7 HSPs)
chr7 (17-233)||(48152528-48152743)
chr7 (261-351)||(48152437-48152527)
chr7 (414-513)||(48152275-48152374)
chr7 (293-350)||(524169-524226)
chr7 (260-337)||(10617279-10617355)
chr7 (426-459)||(34114537-34114570)
chr7 (426-454)||(32631584-32631612)
[»] chr1 (5 HSPs)
chr1 (260-338)||(26284217-26284294)
chr1 (426-460)||(10897699-10897733)
chr1 (426-460)||(14389479-14389513)
chr1 (260-306)||(47784721-47784767)
chr1 (427-459)||(52706446-52706478)
[»] chr2 (7 HSPs)
chr2 (260-348)||(21988155-21988243)
chr2 (260-306)||(11997321-11997367)
chr2 (426-460)||(45547972-45548006)
chr2 (426-459)||(24192659-24192692)
chr2 (426-454)||(12135591-12135619)
chr2 (427-459)||(27979955-27979987)
chr2 (427-459)||(28066485-28066517)
[»] chr3 (3 HSPs)
chr3 (426-461)||(26292558-26292593)
chr3 (260-306)||(23535773-23535819)
chr3 (418-464)||(33995981-33996027)
[»] chr4 (5 HSPs)
chr4 (260-306)||(26340483-26340529)
chr4 (260-306)||(42721869-42721915)
chr4 (427-461)||(44929870-44929904)
chr4 (260-306)||(45341510-45341556)
chr4 (426-459)||(388613-388646)
[»] chr8 (3 HSPs)
chr8 (426-459)||(4656133-4656166)
chr8 (260-304)||(41070390-41070434)
chr8 (260-304)||(41070455-41070499)
[»] chr5 (3 HSPs)
chr5 (293-346)||(28593110-28593163)
chr5 (426-459)||(40411475-40411508)
chr5 (427-459)||(6827948-6827980)
[»] chr6 (1 HSPs)
chr6 (426-458)||(3109347-3109379)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 48152743 - 48152528
Alignment:
Q  17 aagaaggtattcacatgctgcagtaacgagctccacaaatcttcatattgtaatgctgtgnnnnnnntgtacaatccaaatctcaggcttagaaatgatt 116  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  48152743 aagaaggtattcacatgctccagtaacgagctctacaaatcttcatattgtaatgctgtgaaaaaaatgtacaatccaaatctcaggcttagaaatgatt 48152644  T
Q  117 gattttccattaagttattgacaaattaaaaccaagaacctttgaacgaaagacatccaaaccactgcatttatcctttcattttgttagatagagtctg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48152643 gattttccattaagttattgacaaattaaaaccaagaacctttgaacg-aagacatccaaaccactgcatttatccttttattttgttagatagagtctg 48152545  T
Q  217 gtaaacatttctcttca 233  Q
     ||||||||||||||||    
T  48152544 ctaaacatttctcttca 48152528  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 48152527 - 48152437
Alignment:
Q  261 ttgaaatcttataaaatccatgaattcatttcaaatcttttaaaatatcaagatacaaatcctttgaaattcaaattacaaatcttaatag 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48152527 ttgaaatcttataaaatccatgaattcatttcaaatcttttaaaatatcaagatacaaatcctttgaaattcaaattacaaatcttaatag 48152437  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 48152374 - 48152275
Alignment:
Q  414 catgcaaaagttgtctttcaaaatctcaatccaatacaccccctaagtatacagtataaatccgtgaaacaaacttaacattttttgaattgatgtccat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  48152374 catgcaaaagttgtctttcaaaatctcaatccaatacaccccctcagtatacagtataaatccgtgaaacaaacttatcattttttgaattgatatccat 48152275  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 524169 - 524226
Alignment:
Q  293 aaatcttttaaaatatcaagatacaaatcctttgaaattcaaattacaaatcttaata 350  Q
    ||||| |||||||| | |||||| |||| |||||||||| ||||||||||| ||||||    
T  524169 aaatcctttaaaatcttaagatataaattctttgaaatttaaattacaaatattaata 524226  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 10617279 - 10617355
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaatatcaagatacaaatcctttgaaattcaaatt 337  Q
    |||||||| ||||||| ||||| || |||||||||||| |||||||| | | |||  |||||| ||||||||||||||    
T  10617279 tttgaaattttataaa-tccataaaatcatttcaaatcctttaaaattttatgatgtaaatccattgaaattcaaatt 10617355  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Complemental strand, 34114570 - 34114537
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaa 459  Q
    ||||||||||||| ||||||||||||||||||||    
T  34114570 gtctttcaaaatcccaatccaatacaccccctaa 34114537  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 32631584 - 32631612
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccc 454  Q
    |||||||||||||||||||||||||||||    
T  32631584 gtctttcaaaatctcaatccaatacaccc 32631612  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 26284217 - 26284294
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaatatcaagatacaaatcctttgaaattcaaatta 338  Q
    |||||||||||||||| ||||| || ||||| ||||||||||||||| ||| |||| ||||| |||||||| |||||||    
T  26284217 tttgaaatcttataaa-tccataaagtcattccaaatcttttaaaatctcatgatataaatcatttgaaatccaaatta 26284294  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 10897699 - 10897733
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaag 460  Q
    |||||| ||||||||||||||||||||||||||||    
T  10897699 gtcttttaaaatctcaatccaatacaccccctaag 10897733  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 14389479 - 14389513
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaag 460  Q
    |||||| ||||||||||||||||||||||||||||    
T  14389479 gtcttttaaaatctcaatccaatacaccccctaag 14389513  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 47784721 - 47784767
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaat 306  Q
    |||||||||||||||||||||| || |||||||||||  ||||||||    
T  47784721 tttgaaatcttataaaatccataaaatcatttcaaattctttaaaat 47784767  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 459
Target Start/End: Original strand, 52706446 - 52706478
Alignment:
Q  427 tctttcaaaatctcaatccaatacaccccctaa 459  Q
    ||||| |||||||||||||||||||||||||||    
T  52706446 tcttttaaaatctcaatccaatacaccccctaa 52706478  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 21988155 - 21988243
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaatatcaagatacaaatcctttgaaattcaaattacaaatcttaa 348  Q
    ||||||||||||||||  |||  || |||||||||||| | |||||| | |||||  ||||||||| |||| | |||||||||||||||    
T  21988155 tttgaaatcttataaatcccacaaagtcatttcaaatcctataaaatcttaagatgtaaatcctttaaaatcccaattacaaatcttaa 21988243  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 11997367 - 11997321
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaat 306  Q
    |||||||||||||||||||||| || || ||||||||| ||||||||    
T  11997367 tttgaaatcttataaaatccataaaatcttttcaaatcctttaaaat 11997321  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 45547972 - 45548006
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaag 460  Q
    |||||| ||||||||||||||||||||||||||||    
T  45547972 gtcttttaaaatctcaatccaatacaccccctaag 45548006  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Complemental strand, 24192692 - 24192659
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaa 459  Q
    |||||| |||||||||||||||||||||||||||    
T  24192692 gtcttttaaaatctcaatccaatacaccccctaa 24192659  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 12135591 - 12135619
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccc 454  Q
    |||||||||||||||||||||||||||||    
T  12135591 gtctttcaaaatctcaatccaatacaccc 12135619  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 459
Target Start/End: Original strand, 27979955 - 27979987
Alignment:
Q  427 tctttcaaaatctcaatccaatacaccccctaa 459  Q
    ||||||||||||||||||||||||| |||||||    
T  27979955 tctttcaaaatctcaatccaatacatcccctaa 27979987  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 459
Target Start/End: Original strand, 28066485 - 28066517
Alignment:
Q  427 tctttcaaaatctcaatccaatacaccccctaa 459  Q
    ||||||||||||||||||||||||| |||||||    
T  28066485 tctttcaaaatctcaatccaatacatcccctaa 28066517  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 461
Target Start/End: Complemental strand, 26292593 - 26292558
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaagt 461  Q
    |||||| |||||||||||||||||||||||||||||    
T  26292593 gtcttttaaaatctcaatccaatacaccccctaagt 26292558  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 23535819 - 23535773
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaat 306  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||    
T  23535819 tttgaaatcttataaaattcataaaatcatttcaaatcctttaaaat 23535773  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 33996027 - 33995981
Alignment:
Q  418 caaaagttgtctttcaaaatctcaatccaatacaccccctaagtata 464  Q
    ||||| ||||| || ||||||| ||||||||||||||||||||||||    
T  33996027 caaaaattgtcctttaaaatcttaatccaatacaccccctaagtata 33995981  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 26340483 - 26340529
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaat 306  Q
    |||||||||||||||||||||| || || ||||||||| ||||||||    
T  26340483 tttgaaatcttataaaatccataaaatcttttcaaatcctttaaaat 26340529  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 42721869 - 42721915
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaat 306  Q
    |||||||||||||||||||||| || || ||||||||| ||||||||    
T  42721869 tttgaaatcttataaaatccataaaatcttttcaaatcctttaaaat 42721915  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 461
Target Start/End: Complemental strand, 44929904 - 44929870
Alignment:
Q  427 tctttcaaaatctcaatccaatacaccccctaagt 461  Q
    ||||| |||||||||||||||||||||||||||||    
T  44929904 tcttttaaaatctcaatccaatacaccccctaagt 44929870  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 45341510 - 45341556
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaaat 306  Q
    |||||||||||||||||||||| || || ||||||||| ||||||||    
T  45341510 tttgaaatcttataaaatccataaaatcttttcaaatcctttaaaat 45341556  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Complemental strand, 388646 - 388613
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaa 459  Q
    |||||| |||||||||||||||||||||||||||    
T  388646 gtcttttaaaatctcaatccaatacaccccctaa 388613  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 4656133 - 4656166
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaa 459  Q
    |||||| |||||||||||||||||||||||||||    
T  4656133 gtcttttaaaatctcaatccaatacaccccctaa 4656166  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 41070390 - 41070434
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaa 304  Q
    |||||||||||||||||||||| || | |||||||||| ||||||    
T  41070390 tttgaaatcttataaaatccataaaattatttcaaatcctttaaa 41070434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 41070455 - 41070499
Alignment:
Q  260 tttgaaatcttataaaatccatgaattcatttcaaatcttttaaa 304  Q
    |||||||||||||||||||||| || | |||||||||| ||||||    
T  41070455 tttgaaatcttataaaatccataaaattatttcaaatcctttaaa 41070499  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 28593163 - 28593110
Alignment:
Q  293 aaatcttttaaaatatcaagatacaaatcctttgaaattcaaattacaaatctt 346  Q
    ||||||| |||||| |||  ||| |||||||||||||| |||||||||||||||    
T  28593163 aaatcttataaaatctcataatataaatcctttgaaatccaaattacaaatctt 28593110  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 40411475 - 40411508
Alignment:
Q  426 gtctttcaaaatctcaatccaatacaccccctaa 459  Q
    |||||| |||||||||||||||||||||||||||    
T  40411475 gtcttttaaaatctcaatccaatacaccccctaa 40411508  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 6827980 - 6827948
Alignment:
Q  427 tctttcaaaatctcaatccaatacaccccctaa 459  Q
    ||||| |||||||||||||||||||||||||||    
T  6827980 tcttttaaaatctcaatccaatacaccccctaa 6827948  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 3109379 - 3109347
Alignment:
Q  426 gtctttcaaaatctcaatccaatacacccccta 458  Q
    |||||| ||||||||||||||||||||||||||    
T  3109379 gtcttttaaaatctcaatccaatacacccccta 3109347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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