View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_20 (Length: 313)
Name: NF10133_low_20
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 2065148 - 2065415
Alignment:
| Q |
1 |
agatgtatgagtcaaagtttgtatatgcatgctggttaggctctgatggccattgttatgcaatctaactctatatggcatacggtttctcgaaaattat |
100 |
Q |
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| T |
2065148 |
agatgtatgagtcaaagtttgtatatgcatgctggttaggctctgatggccattgttatgcaatctaactctatatggcatacagtttctcgaaaattat |
2065247 |
T |
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| Q |
101 |
gaaatatcaattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065248 |
gaaatatcaattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaat |
2065347 |
T |
|
| Q |
201 |
tcacccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaatata |
267 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065348 |
tcaccagcagaaggaaaaaaaatgttgctttctttgccaaatctcacgacagtgctgcaattaatata |
2065415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 12422927 - 12422771
Alignment:
| Q |
109 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcacccgc |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |
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| T |
12422927 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatgataaaaataaattgctgctttcacccaattcactagc |
12422828 |
T |
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| Q |
209 |
agaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaat |
264 |
Q |
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| T |
12422827 |
agaaggaaaaaaattgttgctttctttgccaaatctcacgacggtgttgcaattaat |
12422771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 30626892 - 30627049
Alignment:
| Q |
109 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataa-aaattgctgctttcacccaattcacccg |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| | |
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| T |
30626892 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatgataaaaaatagattgctgctttcacccaattcactag |
30626991 |
T |
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| Q |
208 |
cagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaat |
264 |
Q |
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| T |
30626992 |
cagaaggaaaaaaattgttgctttctttgccaaatctcacgacagtgttgcaattaat |
30627049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 253
Target Start/End: Complemental strand, 38460326 - 38460177
Alignment:
| Q |
109 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaac----tatgataaataaaaattgctgctttcacccaattcac |
204 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
38460326 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatatatgataaaaataaattgctgctttcacccaattcac |
38460227 |
T |
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| Q |
205 |
ccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtg |
253 |
Q |
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| T |
38460226 |
tagcagaaggaaaaaatttgttgctttctttgccaaatctcacgacagtg |
38460177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 38459830 - 38459891
Alignment:
| Q |
109 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactat |
170 |
Q |
| |
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| T |
38459830 |
aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactat |
38459891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 38460748 - 38460834
Alignment:
| Q |
168 |
tatgataaataaaaattgctgctttcacccaattcacccgcagaaggnnnnnnnt-gttgctttctttgccaaatctcacgacagtg |
253 |
Q |
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||||||||| | ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
38460748 |
tatgataaaaataaattgctgctttcacccaattcactagcagaaggaaaaaatttgttgctttctttgccaaatctcacgacagtg |
38460834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 8719342 - 8719185
Alignment:
| Q |
109 |
aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaac----tatgataaataaaaattgctgctttcacccaattcac |
204 |
Q |
| |
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||||| || ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
8719342 |
aattacaattgttggagaagggaactgaaattgagaacaataatggggagaaatggaactatatatgataaaaataaattgctgctttcacccaattcac |
8719243 |
T |
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| Q |
205 |
ccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaatt |
261 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
8719242 |
tagcagaaggaaaaaaattgttgctttctttgccaaatctcacgacagtgttgcaatt |
8719185 |
T |
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