View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10133_low_21 (Length: 311)

Name: NF10133_low_21
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10133_low_21
NF10133_low_21
[»] chr1 (1 HSPs)
chr1 (19-300)||(43001099-43001380)
[»] chr6 (2 HSPs)
chr6 (135-300)||(10696099-10696264)
chr6 (151-276)||(10695368-10695493)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 43001380 - 43001099
Alignment:
Q  19 catcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatggttccattttttacctgatgtcatcgagttagttttagctgcatatgac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  43001380 catcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatgattccattttttacctgatgccatcaagttagttttagctgcatatgac 43001281  T
Q  119 ttccctagcttaccaacatctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgat 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43001280 ttccctagcttaccaatatctttcctcttcagtttctcaaaacattcggatttgtgattcttgtagtagaactcaatgcagtctgcagttgtcttgtgat 43001181  T
Q  219 caaggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctgatgtcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  43001180 caaggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttctccaagaatagttctttctcttctgatgtcca 43001099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 300
Target Start/End: Complemental strand, 10696264 - 10696099
Alignment:
Q  135 catctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaat 234  Q
    |||||||| |||| | |||||||||||| ||||| |||||||| ||||||||||| || || ||||| || ||||||||||| |||||||||| || |||    
T  10696264 catctttcttcttgattttctcaaaacaatcagacttgtgatttttgtagtagaattccacacagtccgctgttgtcttgtggtcaaggaaagtagaaat 10696165  T
Q  235 tttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctgatgtcca 300  Q
    |||  | |||||||||||||| ||||||||||||| |||||| | ||||||||||||||| |||||    
T  10696164 tttttgaaaatcttttccaaaggcagcaaatttctccaagaaaacctctttctcttctgaagtcca 10696099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 10695368 - 10695493
Alignment:
Q  151 tttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaattttccggaaatctttt 250  Q
    |||||||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||||| || |||||| || |||||||||    
T  10695368 tttctcaaaacaatcagacttatgatttttgtattagaattcaacacagtctgctgttgtcttgtggtcaaggaaagtagaaatttttcgaaaatctttt 10695467  T
Q  251 ccaaatgcagcaaatttcttcaagaa 276  Q
    ||||| || |||||||||| ||||||    
T  10695468 ccaaaggccgcaaatttctccaagaa 10695493  T

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