View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10133_low_23 (Length: 297)

Name: NF10133_low_23
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10133_low_23
NF10133_low_23
[»] chr1 (2 HSPs)
chr1 (6-297)||(1977011-1977302)
chr1 (6-297)||(1984377-1984668)
[»] chr2 (2 HSPs)
chr2 (6-297)||(27162247-27162538)
chr2 (9-166)||(22911124-22911281)
[»] chr5 (1 HSPs)
chr5 (6-297)||(20955650-20955941)
[»] scaffold0764 (1 HSPs)
scaffold0764 (6-297)||(3126-3417)
[»] scaffold0313 (2 HSPs)
scaffold0313 (6-297)||(3198-3489)
scaffold0313 (6-297)||(17355-17646)
[»] scaffold1531 (1 HSPs)
scaffold1531 (9-281)||(966-1238)
[»] scaffold0059 (1 HSPs)
scaffold0059 (21-166)||(43015-43159)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 1977302 - 1977011
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977302 acatcaaaaactctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 1977203  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977202 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 1977103  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1977102 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatcc 1977011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 1984668 - 1984377
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1984668 acatcaaaaactctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 1984569  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1984568 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 1984469  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1984468 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatcc 1984377  T

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Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 27162538 - 27162247
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27162538 acatcaaaaactctagctcaactccacataaccacctccagcatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcaga 27162439  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27162438 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaagaagagtc 27162339  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27162338 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatataaatcttttccaagatattgctgaaaatgcaaaggaaatcc 27162247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 22911281 - 22911124
Alignment:
Q  9 tcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatg 108  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| || ||||||||    
T  22911281 tcaaaaacccttgctcaacttcacataaccacctccaacatgcctactcctgtgtcctcacaaacaactagctatgtcaagagacacttagctcagaatg 22911182  T
Q  109 ttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattca 166  Q
    |||||||| ||||||||||||| || || || ||||||||||| || |||||||||||    
T  22911181 ttaagaagacaagtaagaagaggaaactagagaaagtcaggaacctatcaagcattca 22911124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 20955650 - 20955941
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20955650 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcaga 20955749  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  20955750 atgttaagaagccaagtaagaagagaaagcttgagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactcttctgaaaaagaagagtc 20955849  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20955850 tgatgatgaaatggctgattccccaccaaaggatggtgaatcctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 20955941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 3417 - 3126
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||| |||||    
T  3417 acatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcaga 3318  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |  ||    
T  3317 atgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatc 3218  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    |||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| |||||||    
T  3217 tgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatcc 3126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 3198 - 3489
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||| |||||    
T  3198 acatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcaga 3297  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |  ||    
T  3298 atgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatc 3397  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    |||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| |||||||    
T  3398 tgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatcc 3489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 17355 - 17646
Alignment:
Q  6 acatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcaga 105  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||| |||||    
T  17355 acatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcaga 17454  T
Q  106 atgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtc 205  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |  ||    
T  17455 atgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatc 17554  T
Q  206 tgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatcc 297  Q
    |||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| |||||||    
T  17555 tgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatcc 17646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1531 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold1531
Description:

Target: scaffold1531; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 966 - 1238
Alignment:
Q  9 tcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatg 108  Q
    ||||| ||||| ||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| ||||||||    
T  966 tcaaagactctcgctcaacttaacataaccacctccaacatgcctacccctgtgtcttctcaaacaactagctctttcaagagacactcagctcagaatg 1065  T
Q  109 ttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctga 208  Q
    | |||||| ||| ||||||||| || ||||| |||||||||||  | |||||| |||| ||| |  | ||  | ||||||||  |||| ||||  ||| |    
T  1066 tcaagaagtcaaataagaagaggaaacttgagaaagtcaggaacttatcaagcgttcagagagataaagagaagaactctccctaaaaagaagcatctaa 1165  T
Q  209 tgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaa 281  Q
    |||||| |||||||| || |||| |||||||||||||||| ||| ||| ||||| |||||||  |||||||||    
T  1166 tgatgagatggctgactctccactaaaggatggtgaacccactgctgttaatctcttccaaggaattgctgaa 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 43159 - 43015
Alignment:
Q  21 gctcaactccacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa 120  Q
    |||||||| |||||||||||| ||||||||||||||| ||| ||||   || ||||| ||||| |||| ||||||||||  ||||| | |||||||| ||    
T  43159 gctcaacttcacataaccaccaccaacatgcctactcatgtatcctgagaagcaactggctctatcaagagacactcagaacagaaggataagaagctaa 43060  T
Q  121 gtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattca 166  Q
    | ||||| || ||  ||| ||||||||| ||| |||||||||||||    
T  43059 ggaagaaaaggaaaattggaaaagtcagaaat-tttcaagcattca 43015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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