View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_26 (Length: 241)
Name: NF10133_low_26
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3805246 - 3805021
Alignment:
| Q |
1 |
ataagataggtcacttcaaaaagaattatccggagaatagtgatcttggattatgcaaacaaagggannnnnnnnctccatgatagagaaatgattttat |
100 |
Q |
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| T |
3805246 |
ataagatagatcacttcaaaaaggattatccggagaatagtggtattggattatgcaaacaaagggattttttttctccatgatagagaaatggttttat |
3805147 |
T |
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| Q |
101 |
ggataaatatagagaaaatattcttaaaaaagaacaatcctaccaagcttaagaacttttgacctatgagtttctaatgcaattctcaaagttaatatgg |
200 |
Q |
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| T |
3805146 |
ggataaatatagagaaaatattctaaaaaaagaacaatcctaccaagcttaagaacttttgatctatgagtgtctaatgcaatcctcaaagtcaatatgg |
3805047 |
T |
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| Q |
201 |
tccttgttaaccttattcaccctttc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3805046 |
tccttgttaaccttattcaccctttc |
3805021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 3796571 - 3796452
Alignment:
| Q |
78 |
ccatgatagagaaatgattttatggataaatatagagaaaatattcttaaaaaagaacaatcctaccaagcttaagaacttttgacctatgagtttctaa |
177 |
Q |
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||||||||||||||| |||||| ||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
3796571 |
ccatgatagagaaatacttttatagatgaatatagagaaa-tattctaaaaaaataacaatcctaccaagcttaagaacttttgacctacgagtgtctaa |
3796473 |
T |
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| Q |
178 |
tgcaattctcaaagttaatat |
198 |
Q |
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|||||| |||||||| ||||| |
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| T |
3796472 |
tgcaatcctcaaagtcaatat |
3796452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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