View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_27 (Length: 239)
Name: NF10133_low_27
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 43619571 - 43619389
Alignment:
| Q |
18 |
catgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcctacaagaaggcaaaaacaaag |
117 |
Q |
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| T |
43619571 |
catgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcctacaagaaggcaaaaacaaag |
43619472 |
T |
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| Q |
118 |
aaaacacaatcaccttgagctcaagtaacatgtgatgtgctatgtatctcgacacttcaaattattaatagtgtcgatgtgtt |
200 |
Q |
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| T |
43619471 |
aaaacacaatcaccttgagctcaagtaacatgtgatgtgctatgtatctcgacacttcaaattattaatagtgtcgatgtgtt |
43619389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43626888 - 43626809
Alignment:
| Q |
18 |
catgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
97 |
Q |
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| T |
43626888 |
catgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggatcccagcct |
43626809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 32407666 - 32407745
Alignment:
| Q |
18 |
catgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
97 |
Q |
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| T |
32407666 |
catgtgtgagcttattgcagctcctgcagttgcaccaaatccaggtactacattgagcactccatctggaattccagcct |
32407745 |
T |
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