View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_3 (Length: 414)
Name: NF10133_low_3
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 99 - 398
Target Start/End: Original strand, 36946329 - 36946637
Alignment:
| Q |
99 |
aagtttggctggtttg-ttgatgttgacttctgatgtcattctacatgcaggaatttcattcagctgatactttccggtgataatagtggaagggttttg |
197 |
Q |
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| T |
36946329 |
aagtttggctggttttattggtgctgacttctgatgtcattctacatgcaggaatttcattcagctgatactttctggtgacaatagtgggagggttttg |
36946428 |
T |
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| Q |
198 |
aaatacaattctgccaccaaggaaaccactgttcttgtgagaaacgttcaatttccaaatgggatttccttaagcaaggatgattccttctttgtatttt |
297 |
Q |
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| T |
36946429 |
aaatacaattctgccaccaaggaaaccaccgttcttgttagaaacattcaatttccaaatgggatttccttaagcaaggatggttccttctttgtatttt |
36946528 |
T |
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| Q |
298 |
cagaaggagtaatcggaaggtgtgtgaataatcaacaaaaccctttttccgt-------caatacactaatgatgc-aacaagttttacaaagacgtcca |
389 |
Q |
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| T |
36946529 |
cagaaggagtaattggaaggtgtgtgaataatcaacataacccttttttcgtctaataacgatacactaatgatgcaaacaagttttacaaagacgttca |
36946628 |
T |
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| Q |
390 |
acatatttt |
398 |
Q |
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| T |
36946629 |
aaatatttt |
36946637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 146 - 297
Target Start/End: Complemental strand, 17768394 - 17768243
Alignment:
| Q |
146 |
caggaatttcattcagctgatactttccggtgataatagtggaagggttttgaaatacaattctgccaccaaggaaaccactgttcttgtgagaaacgtt |
245 |
Q |
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| T |
17768394 |
caggaatttcatgcagctggtattttccggggatgatagtggaaaggttttgaaatacaaccctgcaacaaaggaaaccactgttctagtgaggaatgtt |
17768295 |
T |
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| Q |
246 |
caatttccaaatgggatttccttaagcaaggatgattccttctttgtatttt |
297 |
Q |
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| T |
17768294 |
caattcccaaatggcatttccttaagcaaagattgttccttctttgtttttt |
17768243 |
T |
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