View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_5 (Length: 399)
Name: NF10133_low_5
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 2675043 - 2675428
Alignment:
| Q |
1 |
tcagacaaaaaataaaatcatgcatctatctcagcatcattatataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaa |
100 |
Q |
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| T |
2675043 |
tcagacaaaaaataaaatcatgcatctatctcagcatgattatataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaa |
2675142 |
T |
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| Q |
101 |
acttagaaa-ttgcatacaagtttacaaccatccatgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatga |
199 |
Q |
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| T |
2675143 |
acttagaaaattgcatacaagtttacaaccatccatgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatga |
2675242 |
T |
|
| Q |
200 |
aacactataaatagtgcatgaaatgaaactcaaaatctcacaacaaaagtagtcgacatatattcaattcataggaagaaagtttctatcatataagaca |
299 |
Q |
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| T |
2675243 |
aacactataaatagtgcatgaaatgaaactcaaaatctcacaacaaaagtagtctacatatattcaattcataggaagaaagtttgtatcatataagaca |
2675342 |
T |
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| Q |
300 |
aactagtgagtgaagcagttataccatttgaagaagaaagatggcatcccacgatcagagcttcaaagctggtgagaccatgggtc |
385 |
Q |
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| T |
2675343 |
aactagtgagtgaagcagttataccatttgaagaagaaagatggcatcccaagatcagagcttcaaagctggtgagaccatgggtc |
2675428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 2681371 - 2681737
Alignment:
| Q |
7 |
aaaaaataaaatcatgcatctatctcagcatcattatataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaaacttag |
106 |
Q |
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| T |
2681371 |
aaaaaaaaaaatcatggat--atcttagcatcgttatataataaacaagt---ggcaacttgtcaaaattctagaggctggtttattatcttaaacttat |
2681465 |
T |
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| Q |
107 |
aaattgcatacaagtttacaaccatccatgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatgaaacacta |
206 |
Q |
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|||| |||| ||||||||||||||||||||| | ||||| ||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
2681466 |
aaatggcattcaagtttacaaccatccatggaacgacacgtgttgtggacgtgtcaagaagttggacacgtggttatcatacactacctatgaaacacta |
2681565 |
T |
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| Q |
207 |
taaatagtgcatgaaatgaaactcaaaatctcacaacaaaagtagtcgacatatattcaattcataggaagaaagtttctatcatataagacaaactagt |
306 |
Q |
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| T |
2681566 |
taaataatgcat-caatgaaactcaaaacctcacaacaaaaatattcgacatatatt--attcataggaagaaagtttctatcat---acataaactagt |
2681659 |
T |
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| Q |
307 |
gagtg-aagcagttataccatttgaagaagaaagatggcatcccacgatcagagcttcaaagctggtgagaccatggg |
383 |
Q |
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| T |
2681660 |
aggtgaaaccaattataccatttgaagaagaaagatggcatcccacaatcagagctacaaagctggtgaaaccatggg |
2681737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 2666000 - 2666176
Alignment:
| Q |
37 |
tcattatataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaaacttagaaattgcatacaagtttacaaccatc--ca |
134 |
Q |
| |
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|||| |||||||| ||||||||| |||||||||||||| || ||||| || || ||||||||||||| | ||| ||| ||||||| ||||||| | |
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| T |
2666000 |
tcatcatataataatcaagtaattgcaacttgtcaaaactccacaggctgattcctcatcttaaact-ataaag-gcactcaagtttgtaaccatcatct |
2666097 |
T |
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| Q |
135 |
tgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatgaaacactataaatag |
213 |
Q |
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| T |
2666098 |
tagggcaacacgtgttgtaaacgtgtcaagaagttgaatacgtggttatcatacatgactcatgaaatactataaatag |
2666176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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