View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10133_low_8 (Length: 379)
Name: NF10133_low_8
Description: NF10133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10133_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 114 - 353
Target Start/End: Complemental strand, 45105085 - 45104849
Alignment:
| Q |
114 |
ttattcttacaactacgtgatactacttactcgagccacttataataatatagagtatctagtatcaaattgaccctatctctataagatttggattctc |
213 |
Q |
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| T |
45105085 |
ttattcttacaactacgtgatact---tactcgagccacttataataatatagagtatctagtatcaaattgaccctatctctataagatttggattctc |
45104989 |
T |
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| Q |
214 |
ttgaattgcatttgaatatggattataatattttgttctgttctgagtgatatcttggaaatgtcaagatcccgtgtcatcggcagcaccgctcgctgct |
313 |
Q |
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| T |
45104988 |
ttgaattgcatttgaatatggattataatattttgttctgttctgagtgatatcttggaaatgtcaagatcccgtgtcatcggcagcaccgctcgctgct |
45104889 |
T |
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| Q |
314 |
catcacgattcacaagtgtgagtataaatgggaagacttt |
353 |
Q |
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| T |
45104888 |
catcacaattcacaagtgtgagtatcaatgggaagacttt |
45104849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 45105186 - 45105108
Alignment:
| Q |
18 |
aatccgatataacatcaattttaattaactcatcnnnnnnnnnctctatgtatgtttggcatggatggtagtatatttc |
96 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
45105186 |
aatccgatataacatcaattttaattaactcatctttttttttctctatgtatgtaaggcatggatggtagtatatttc |
45105108 |
T |
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