View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10134_high_1 (Length: 772)
Name: NF10134_high_1
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10134_high_1 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 16 - 707
Target Start/End: Complemental strand, 936324 - 935623
Alignment:
| Q |
16 |
acttctttaggcaagaattttgcatcatcatttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936324 |
acttctttaggcaagaattttgcatcatcatttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaa |
936225 |
T |
|
| Q |
116 |
gtgctacagttggtttatcatgtaactgtgtttcacttgcagcataattgtacaaaaatggagatttgtttccaactgaaacatgtactggttttcctct |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936224 |
gtgctacatttggtttatcatgtaactgtgtttcacttgcagcataattgtacaaaaatggagatttgtttccaactgaaacatgtactggttttcctct |
936125 |
T |
|
| Q |
216 |
tccttttcctgcatgaacatttacaccacctttgccaacattaactgctgttccaccacctggttttcctttacctgcatttacatgaactccacctttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936124 |
tccttttcctgcatgaacatttacaccacctttgccaacattaactcttgttccaccacctggttttcctttacctgcatttacatgaactccacctttg |
936025 |
T |
|
| Q |
316 |
ccaacattcactgctgttccacctggctttgtttttcctgcatcaacatggactccaccttttccaacatttactgaggttcctcctggttttgtttttc |
415 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936024 |
ccaacattgactgctgttccacctggctttgtttttcctgcatcaacatggactccaccttttccaacatttactgaggttcctcctggttttgtttttc |
935925 |
T |
|
| Q |
416 |
ctgaatcaacattcacacctccttttcctacagctactgatgtgcttttctcttcggtccaatctgcacattcatatatagtttgtgtcaattcatcatc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935924 |
ctgaatcaacattcacacctccttttcctacagctactgatgtgcttttctcttcggtccaatctgcacattcatatatagtttgtgtcaattcatcatc |
935825 |
T |
|
| Q |
516 |
ataggccaaact----------caacgcgatgatgagcgggttggtttggattgagttatgaaaccattttttgaaaatttccaaaaatgtacacggtaa |
605 |
Q |
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|||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935824 |
ataggccaaactcaaccttaatcaacgtgatgatgagtgggttggtttggattgagttatgaaaccattttttgaaaatttccaaaaatgtacacggtaa |
935725 |
T |
|
| Q |
606 |
aatgacattttatttcatgaaattttaacaattgcactaaattcttctaaatcataatttaacacttatattcaattaaaacacttgtagatcaatacat |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |
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| T |
935724 |
aatgacattttatttcatgaaattttaacaattgcactaaattcttctaaatcataatttaacacttattttcaattaaaacacttgtagatcgacacat |
935625 |
T |
|
| Q |
706 |
aa |
707 |
Q |
| |
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|| |
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|
| T |
935624 |
aa |
935623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 420056 - 420179
Alignment:
| Q |
44 |
catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacagttggtttatcatgtaactg |
143 |
Q |
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|||||||| |||| || |||||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||| ||||||||||||||||||| |
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| T |
420056 |
catttgaagtggtcttagtgaattgcaagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactg |
420155 |
T |
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| Q |
144 |
tgtttcacttgcagcataattgta |
167 |
Q |
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|| |||||||||||||||||||| |
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| T |
420156 |
agtctcacttgcagcataattgta |
420179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 975105 - 974970
Alignment:
| Q |
44 |
catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacagttggtttatcatgtaactg |
143 |
Q |
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| T |
975105 |
catttgaagtggtcttagagaattgcaagttcagttttgttccatgatgcaggtccttttccagaaagaagagtgctacatttggtttatcatgtaattg |
975006 |
T |
|
| Q |
144 |
tgtttcacttgcagcataattgtacaaaaatggaga |
179 |
Q |
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|| ||||||||||||||||| || | ||||||||| |
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| T |
975005 |
agtctcacttgcagcataattataaataaatggaga |
974970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 971481 - 971399
Alignment:
| Q |
58 |
tttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacagttggtttatcatgtaa |
140 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||| |||| || ||||||||||||| |
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| T |
971481 |
tttgtgaattgcaagttcaattttgttccatgatgcaaatcttttttcaagaagaaaagtgttacattttgtttatcatgtaa |
971399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 942211 - 942129
Alignment:
| Q |
58 |
tttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacagttggtttatcatgtaa |
140 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||| || ||||||||||||| |
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| T |
942211 |
tttgtgaattgcaagttcaattttgttccatgatgcaaatcttttttcaagaagaaaagtgtgacattttgtttatcatgtaa |
942129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 949183 - 949106
Alignment:
| Q |
63 |
gaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacagttggtttatcatgtaa |
140 |
Q |
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||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||| |||| || ||||||||||||| |
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| T |
949183 |
gaattgcaagttcaattttgttccatgatgcaaatcttttttcaagaagaaaagtgttacattttgtttatcatgtaa |
949106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 960205 - 960082
Alignment:
| Q |
16 |
acttctttaggcaagaattttg---catcatcatttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaaga |
112 |
Q |
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|||||| ||||||||||||||| ||| || ||||||| | || | | |||||||||||||||| |||||||| ||||||||||| |||| ||||||| |
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| T |
960205 |
acttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagttcaattttgttccatgatgcaaatcttttttcaagaaga |
960106 |
T |
|
| Q |
113 |
aaagtgctacagttggtttatcat |
136 |
Q |
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|||||| |||| || ||||||||| |
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| T |
960105 |
aaagtgttacattttgtttatcat |
960082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 10515 - 10392
Alignment:
| Q |
44 |
catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacagttggtttatcatgtaactg |
143 |
Q |
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|||||||| |||| || |||||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||| ||||||||||||||||||| |
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| T |
10515 |
catttgaagtggtcttagtgaattgcaagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactg |
10416 |
T |
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| Q |
144 |
tgtttcacttgcagcataattgta |
167 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
10415 |
agtctcacttgcagcataattgta |
10392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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