View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10134_high_4 (Length: 329)

Name: NF10134_high_4
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10134_high_4
NF10134_high_4
[»] chr8 (1 HSPs)
chr8 (80-294)||(30363587-30363795)
[»] chr3 (1 HSPs)
chr3 (181-294)||(31466772-31466885)
[»] chr5 (1 HSPs)
chr5 (180-267)||(10551276-10551363)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 80 - 294
Target Start/End: Original strand, 30363587 - 30363795
Alignment:
Q  80 atttctatttttagtttttctttctggtccttttatttgcttacaattaacattttgataataatttaagggtgttaactgnnnnnnnnattactttaat 179  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||         |||  ||| |    
T  30363587 atttctatttttagtttttctttctggtcattttatttgcttagaattaacattttgataataatttaagggtgttaactgttttt----tta--ttact 30363680  T
Q  180 tttcagagtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaagaagacctacgga 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30363681 tttcagagtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaagaagacctacaga 30363780  T
Q  280 tagaatgtttgaaga 294  Q
    || ||||||||||||    
T  30363781 taaaatgtttgaaga 30363795  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 31466885 - 31466772
Alignment:
Q  181 ttcagagtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaagaagacctacggat 280  Q
    ||||||||||||||||||||||| | | ||| ||||||| |||||||||||||| ||||||||| ||||||||||| | |||| ||| |||||||| |||    
T  31466885 ttcagagtatggaatgggttctaagctttcagttgaaggcgacatgtatagcttcggaattctaattttagaaatgctgaccgcaaggagacctacagat 31466786  T
Q  281 agaatgtttgaaga 294  Q
      ||||||||||||    
T  31466785 gaaatgtttgaaga 31466772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 10551276 - 10551363
Alignment:
Q  180 tttcagagtatggaatgggttctatgttgtcaattgaaggagacatgtatagctttggaattctagttttagaaatgttaaccggaag 267  Q
    ||||||||||||||||||||| |  | |||||| |||||| |||||||||||||||||||||||  | |||||||||||||| |||||    
T  10551276 tttcagagtatggaatgggttttgaggtgtcaactgaaggtgacatgtatagctttggaattctgttattagaaatgttaactggaag 10551363  T

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