View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10134_low_13 (Length: 251)

Name: NF10134_low_13
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10134_low_13
NF10134_low_13
[»] chr8 (1 HSPs)
chr8 (95-249)||(31471488-31471642)
[»] chr7 (2 HSPs)
chr7 (79-128)||(48551485-48551534)
chr7 (84-128)||(32141590-32141634)
[»] chr5 (1 HSPs)
chr5 (91-128)||(10950919-10950956)
[»] chr4 (1 HSPs)
chr4 (81-126)||(42725942-42725987)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 31471642 - 31471488
Alignment:
Q  95 taaaaggaaattaagggttaagatttggagtaagaatataggcttgcttactcttgaagtaaatatatccatcttcatgattgattttcttcattatatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31471642 taaaaggaaattaagggttaagatttggagtaagaatataggcttgcttactcttgaagtaaatatatccatcttcatgattgatttccttcaatatatt 31471543  T
Q  195 gattatttgcttatttatcgtttcatgatatatatttcgcattcatctcactcga 249  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  31471542 gattatttgcttatttatcgtttcataatatatatttcgcattcatttaactcga 31471488  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 48551534 - 48551485
Alignment:
Q  79 attagaaccattagattaaaaggaaattaagggttaagatttggagtaag 128  Q
    ||||||||| |||||||||||  ||||||||||||||||||| |||||||    
T  48551534 attagaaccgttagattaaaattaaattaagggttaagatttagagtaag 48551485  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 32141590 - 32141634
Alignment:
Q  84 aaccattagattaaaaggaaattaagggttaagatttggagtaag 128  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||    
T  32141590 aaccatcagattaaaagaaaattaatggttaagatttggagtaag 32141634  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 10950919 - 10950956
Alignment:
Q  91 agattaaaaggaaattaagggttaagatttggagtaag 128  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  10950919 agattaaaagaaaattaatggttaagatttggagtaag 10950956  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 42725987 - 42725942
Alignment:
Q  81 tagaaccattagattaaaaggaaattaagggttaagatttggagta 126  Q
    ||||||| |||||||||||  |||||||||||| ||||||||||||    
T  42725987 tagaaccgttagattaaaattaaattaagggttgagatttggagta 42725942  T

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