View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10134_low_15 (Length: 241)
Name: NF10134_low_15
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10134_low_15 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9803756 - 9803979
Alignment:
| Q |
1 |
tcttgccaaagttcatgtcctcatcatatacattgcacgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctac |
100 |
Q |
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| T |
9803756 |
tcttgccaaagttcatgtcctcatcatatacattgcacgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctac |
9803855 |
T |
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| Q |
101 |
atcaccgttacatcctccatcttgggacatgctagaggtgacttcacgactagatacatcaaaatcatcgacgataaaacctctcaagtttccttcttcg |
200 |
Q |
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| T |
9803856 |
atcaccattacatcctccatcttgggacatgctagaggtgacttgacaactagatacatcaaaatcatcgacgataaaatctataaagtttccttcttcg |
9803955 |
T |
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| Q |
201 |
ctttgtgataagtcctctattgat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
9803956 |
ctttgtgataagtcctctattgat |
9803979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 9828638 - 9828821
Alignment:
| Q |
38 |
cgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctacatcaccgttacatcctccatcttgggacatgctagag |
137 |
Q |
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| T |
9828638 |
cgaatcagaatccttgctat---gatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagag |
9828734 |
T |
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| Q |
138 |
gtgacttcacgactagatacatcaaaatcatcgacgataaaacctctcaagtttccttcttcgctttgtgataagtcctctattgat |
224 |
Q |
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| T |
9828735 |
gtgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttccttcctcactttgtgataagtcctctattgat |
9828821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 9755197 - 9755346
Alignment:
| Q |
75 |
tgcgagttattcaaatcagagtctacatcaccgttacatcctccatcttgggacatgctagaggtgacttcacgactagatacatcaaaatcatcgacga |
174 |
Q |
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||||||| ||||||||||||||| |||||||| |||| |||||||||||| ||| |||||||||||||||||| || ||||| |||||||||||| || | |
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| T |
9755197 |
tgcgagtcattcaaatcagagtccacatcaccattacgtcctccatcttgtgacttgctagaggtgacttcacaaccagataaatcaaaatcatcaacaa |
9755296 |
T |
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| Q |
175 |
taaaacctctcaagtttccttcttcgctttgtgataagtcctctattgat |
224 |
Q |
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| T |
9755297 |
taaaacctttcaagtttccttcctcactttgtgataagtcctctattgat |
9755346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7087 - 7309
Alignment:
| Q |
1 |
tcttgccaaagttcatgtcctcatcatatacattgcacgaatcagaatctttgctattatgatattgtaaatcatgcgagttattcaaatcagagtctac |
100 |
Q |
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|||| |||||||| |||||||||||| |||||||| ||||| |||||| |||| || ||| ||||||||||||||||| ||| ||||||||||| || |
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| T |
7087 |
tcttaccaaagttaatgtcctcatcagatacattgtgcgaattagaatccttgccat---gatcttgtaaatcatgcgagtcatttaaatcagagtccac |
7183 |
T |
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| Q |
101 |
atcaccgttacatcctc--catcttgggacatgctagaggtgacttcacgactagatacatcaaaatcatcgacgataaaacctctcaagtttccttctt |
198 |
Q |
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||||||||||| ||||| | ||||| ||| ||||||||| |||||||| ||||||| |||||||||||| || ||||||||| ||||||||||||||| |
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| T |
7184 |
atcaccgttacgtcctctccttcttgtgacttgctagaggcgacttcacagctagatatatcaaaatcatcaacaataaaacctttcaagtttccttctt |
7283 |
T |
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| Q |
199 |
cgctttgtgataagtcctctattgat |
224 |
Q |
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| T |
7284 |
cactttgtgataagtcctctattgat |
7309 |
T |
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