View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10134_low_2 (Length: 521)
Name: NF10134_low_2
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10134_low_2 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Complemental strand, 18914375 - 18913884
Alignment:
| Q |
18 |
aaattgcaccttcatcgatcaccacgaaacaccaccattttactattacctgactgggccagtcctgccggcattgatttgagtgttgttcccattccca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18914375 |
aaattgcaccttcatcgatcaccacgaaacaccaccattttactattacctgactgggccagtcctgccggcattgatttgagtgttgttcccattccta |
18914276 |
T |
|
| Q |
118 |
taagtcgcttgctcgaaagtccgttactcatggatcactacatacctcactacttacgattgagggaattcgccattcacaatgatccttattacttttt |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18914275 |
taagttacttgctcgaaagtccgttactcatggatcactacgtacctcactacttacgattgagggaattcgccattcacaatgatccttattacctttt |
18914176 |
T |
|
| Q |
218 |
gagtaatgtggattgttatcaaatagttggttcctgcaatggattgatttgtttgcgtggaaccgctaagcatgataactattggttccgtttatggaac |
317 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18914175 |
gagtaatatggattgttatcaaatagttggttcctgcaatggattgatttgtttgcgtggaaccgctaagcatgataactattggttccgtttatggaac |
18914076 |
T |
|
| Q |
318 |
ccagccacaaattcattatctgaaaatttagggttttccgagaaccgtttaaggttaacattcggctatgatgttttaaacgacacttataaggtggtag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18914075 |
ccagccacaaattcattatctgaaaatttagggttttccgagaaccgtttaaggttaacattcggctatgatgttttaaacgacacttataaggtggtag |
18913976 |
T |
|
| Q |
418 |
gattctctgctatcaccgtgaaagttttcagtctaggcgataatgtatggaaggatattccaagttttcctattgtcccgtttaaccttcgt |
509 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18913975 |
gattctctgctatcaccgtgaaagttttcagtctaggtgataatgtatggaaggatattccaagttttcctattgtcccgtttaaccttcgt |
18913884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 298 - 500
Target Start/End: Complemental strand, 18909350 - 18909148
Alignment:
| Q |
298 |
attggttccgtttatggaacccagccacaaattcattatctgaaaatttagggttttccgagaaccgtttaaggttaacattcggctatgatgttttaaa |
397 |
Q |
| |
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|||||||||||||||||||||||| ||| || ||||||||||||| ||||| | ||| ||| ||||||||||||||||||||| || |||| |
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| T |
18909350 |
attggttccgtttatggaacccagtcacgaacacattatctgaaaaattaggtaacttaaccaactatttcaggttaacattcggctatgatattataaa |
18909251 |
T |
|
| Q |
398 |
cgacacttataaggtggtaggattctctgctatcaccgtgaaagttttcagtctaggcgataatgtatggaaggatattccaagttttcctattgtcccg |
497 |
Q |
| |
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|||| |||||||||||| | ||||||||||| ||| ||||||||||||||| | | |||||||| |||| ||||||||||||||||||||||| ||| |
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| T |
18909250 |
tgacatttataaggtggtggcattctctgctaacacagtgaaagttttcagtttgagggataatgtttggagagatattccaagttttcctattgttccg |
18909151 |
T |
|
| Q |
498 |
ttt |
500 |
Q |
| |
|
||| |
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|
| T |
18909150 |
ttt |
18909148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 500
Target Start/End: Complemental strand, 18921203 - 18921075
Alignment:
| Q |
372 |
ttaacattcggctatgatgttttaaacgacacttataaggtggtaggattctctgctatcaccgtgaaagttttcagtctaggcgataatgtatggaagg |
471 |
Q |
| |
|
|||||||| ||||||||| ||| |||||| |||||||||||||| | |||||||||| ||| ||||||||||||||| | | |||||||| |||| || |
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| T |
18921203 |
ttaacatttggctatgatatttcaaacgaaacttataaggtggtggacttctctgctaacacggtgaaagttttcagtttgagtgataatgtttggaggg |
18921104 |
T |
|
| Q |
472 |
atattccaagttttcctattgtcccgttt |
500 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |
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|
| T |
18921103 |
atattcaaagttttcctattgttccgttt |
18921075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 18921381 - 18921305
Alignment:
| Q |
202 |
atccttattactttttgagtaatgtggattgttatcaaatagttggttcctgcaatggattgatttgtttgcgtgga |
278 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
18921381 |
atccttattaccttttgagtaatatggattgcgatcatgtcattggttcctgcaatggattgatttgtttgcgtgga |
18921305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 18921519 - 18921399
Alignment:
| Q |
22 |
tgcaccttcatcgatcaccacgaaacaccaccattttactattacctgactgggccagtcctgccggcattgatttgagtgttgttcccattcccataag |
121 |
Q |
| |
|
|||||||||||||||| || || |||||| | | ||||||||||| ||||| |||| ||||| || || |||||||||| ||| || ||||| |||| |
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|
| T |
18921519 |
tgcaccttcatcgatcgccgcggaacacccacgtcttactattaccagactgcgccaatcctgacgagatggatttgagtgctgtaccaattcctgtaag |
18921420 |
T |
|
| Q |
122 |
tcgcttgctcgaaagtccgtt |
142 |
Q |
| |
|
|| ||||||||||||||||| |
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| T |
18921419 |
tcatttgctcgaaagtccgtt |
18921399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 19779131 - 19779248
Alignment:
| Q |
298 |
attggttccgtttatggaacccagccacaaattcattatctgaaaatttagggttttccgagaaccgtttaaggttaacattcggctatgatgttttaaa |
397 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| || | || ||| ||| ||||||| || |||||| ||| ||| |
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| T |
19779131 |
attggtttcgtttttggaacccagccacaaacacattatctgaagatttagggtgtttaaacaagtttttgaggctaacatttggatatgatatttcaaa |
19779230 |
T |
|
| Q |
398 |
cgacacttataaggtggt |
415 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
19779231 |
tgacacttataaggtggt |
19779248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 415
Target Start/End: Complemental strand, 19351584 - 19351469
Alignment:
| Q |
300 |
tggttccgtttatggaacccagccacaaattcattatctgaaaatttagggttttccgagaaccgtttaaggttaacattcggctatgatgttttaaacg |
399 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||| |||||| ||| || ||| | ||||||||| ||||||||| ||| ||| | |
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|
| T |
19351584 |
tggttacgtttctggaacccagccacaaagacattatctgaaaaaatagggtattcaactaaattttttaagttaacatttggctatgatatttcaaatg |
19351485 |
T |
|
| Q |
400 |
acacttataaggtggt |
415 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
19351484 |
acacttataaggtggt |
19351469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 415
Target Start/End: Complemental strand, 19888252 - 19888135
Alignment:
| Q |
298 |
attggttccgtttatggaacccagccacaaattcattatctgaaaatttagggttttccgagaaccgtttaaggttaacattcggctatgatgttttaaa |
397 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||| || | | ||| ||||||||||| || |||||| ||| ||| |
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|
| T |
19888252 |
attggtttcgtttttggaacccagccacaaacacattatctgaagaattagggtgtttaaacgagtttttcaggttaacatttggatatgatatttcaaa |
19888153 |
T |
|
| Q |
398 |
cgacacttataaggtggt |
415 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
19888152 |
tgacacttataaggtggt |
19888135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 29454753 - 29454721
Alignment:
| Q |
240 |
atagttggttcctgcaatggattgatttgtttg |
272 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29454753 |
atagttggttcctgcaatggattgatctgtttg |
29454721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 7452 - 7535
Alignment:
| Q |
190 |
ccattcacaatgatccttattactttttgagtaatgtggattgttatcaaatagttggttcctgcaatggattgatttgtttgc |
273 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||| ||||||| | | | || ||||||||||| ||||||||||| ||||||| |
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|
| T |
7452 |
ccattctcaattatccttattaccgattgagtaatatggattgctgtaatatcgttggttcctgtaatggattgatatgtttgc |
7535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 12735353 - 12735310
Alignment:
| Q |
300 |
tggttccgtttatggaacccagccacaaattcattatctgaaaa |
343 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||||||||| |
|
|
| T |
12735353 |
tggttccgtctctggaacccagccacaaatacattatctgaaaa |
12735310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 3625188 - 3625220
Alignment:
| Q |
240 |
atagttggttcctgcaatggattgatttgtttg |
272 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
3625188 |
atagttggttcctgcaatggattgatatgtttg |
3625220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 14748993 - 14749039
Alignment:
| Q |
369 |
aggttaacattcggctatgatgttttaaacgacacttataaggtggt |
415 |
Q |
| |
|
||||||||||| || |||||| ||| ||||||||||||||||||||| |
|
|
| T |
14748993 |
aggttaacatttggatatgatatttcaaacgacacttataaggtggt |
14749039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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