View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10134_low_4 (Length: 423)
Name: NF10134_low_4
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10134_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 335018 - 334613
Alignment:
| Q |
1 |
tcatgattttagttccttcagggcgtctggttgtcaggtggattctttctccaatgttgtaaccaataacaatttataaagataaaattccaagtaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
335018 |
tcatgattttagttccttcagggcgtctggttgtcaggtggattctttctccaatgttgtaaccaataacaatttataaagataaaattccaagcaatca |
334919 |
T |
|
| Q |
101 |
gtagttttacccaaaatggaacctttttaagacattgaccctcttctgtattcctctgaaggaatggggcttgtccatctatgtacattgatttgtttgg |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334918 |
gtagttttacccaaaatggaacctttttaacacattgaccctcttctgtattcctctgaaggaatggggcttgtccatctatgtacattgatttgtttgg |
334819 |
T |
|
| Q |
201 |
tgaacttcacaattatcacatagcagtcattattacactatcatttaaaggattgatttcagtttaatactccttgtgtattattcctaaagnnnnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334818 |
tgaacttcacaattatcacatagcagtcattattacactatcatttaaaggattgatttcagtttaatactccttgtgtattattcctaa--tttttttt |
334721 |
T |
|
| Q |
301 |
nnnnnnnnnaaccatgtcctctcttttcttttcaaaattagaggtctgttttgaagttctatattgtatcatgcaaagtttatttgaactatccgtaaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
334720 |
tttttttttaaccatgtcctctcttttcttttcaaaattagaggtctgttttgaagttctatattgtatcatgcaaagtttatttgaactatccgtaaaa |
334621 |
T |
|
| Q |
401 |
tctgatgt |
408 |
Q |
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|||||||| |
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| T |
334620 |
tctgatgt |
334613 |
T |
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