View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10134_low_5 (Length: 368)
Name: NF10134_low_5
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10134_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 47804408 - 47804047
Alignment:
| Q |
1 |
ttttcctttccagatgaatcatctgaatttttcgcaatgtgaaactcgaggagagaatatatctgagacttcaacacagctttctttttaaatataggaa |
100 |
Q |
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| T |
47804408 |
ttttcctttctagatgaatcatctgaatttttcgcaatgtgaaactcgagtagagaatatatctgagacttcaacacagctttctttttaaatataggaa |
47804309 |
T |
|
| Q |
101 |
acaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatgagagatcttattccccattgcat |
200 |
Q |
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| T |
47804308 |
acaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatgagagatcttattccccattgcat |
47804209 |
T |
|
| Q |
201 |
cattggttcggtattgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccaacaaattccattgaactataccgattctgtttc |
300 |
Q |
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| T |
47804208 |
cattggttcggttttgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccgacaaattccattgaactataccgattctgtttc |
47804109 |
T |
|
| Q |
301 |
ttcagcttatgcacacctgtatattcttcaatattgttggtatcattttgtttctctgcttc |
362 |
Q |
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| T |
47804108 |
ttcagcttatgcacacctgtatattcttcaatattgttggtatcattttgtttctcttcttc |
47804047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 80 - 319
Target Start/End: Complemental strand, 47806873 - 47806634
Alignment:
| Q |
80 |
ctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatgag |
179 |
Q |
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| T |
47806873 |
ctttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatgag |
47806774 |
T |
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| Q |
180 |
agatcttattccccattgcatcattggttcggtattgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccaacaaattccatt |
279 |
Q |
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| T |
47806773 |
agattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattcccct |
47806674 |
T |
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| Q |
280 |
gaactataccgattctgtttcttcagcttatgcacacctg |
319 |
Q |
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| T |
47806673 |
gaactatagcgcttccgtttgttcggcttatgcatacctg |
47806634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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