View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10134_low_7 (Length: 348)

Name: NF10134_low_7
Description: NF10134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10134_low_7
NF10134_low_7
[»] chr1 (4 HSPs)
chr1 (8-348)||(9803366-9803706)
chr1 (66-167)||(37738420-37738521)
chr1 (263-348)||(9824163-9824248)
chr1 (296-348)||(9813710-9813762)
[»] chr7 (3 HSPs)
chr7 (44-158)||(19814274-19814388)
chr7 (54-167)||(18476614-18476727)
chr7 (66-167)||(3003923-3004024)
[»] chr2 (1 HSPs)
chr2 (66-167)||(23681221-23681322)
[»] chr5 (2 HSPs)
chr5 (65-167)||(36732278-36732380)
chr5 (54-124)||(23885000-23885073)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 9803366 - 9803706
Alignment:
Q  8 gagatgaagaaatgggagatggttcaagggagacaaatgatgaagtagaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803366 gagatgaagaaatgggagatggttcaagggagacaaatgatgaagtagaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaaga 9803465  T
Q  108 aggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctctagatgaatctaattctattttttattcctacctgagagcatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803466 aggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctctagatgaatctaattctattttttattcctacctgagagcatca 9803565  T
Q  208 tgcttgttaaatccacgctcgttatggaaaaatgttcccttgatcacctgttccccagaagtttgttgttgataaatagcgcaaacaaccttcatacata 307  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9803566 tgcttgttaaatccacgctcgttacggaaaaatgttcccttgatcacctgttccccagaagtttgttgtcgataaatagcgcaaacaaccttcatacata 9803665  T
Q  308 acacaggatccttcccaaattatgcaagcatctcaacctcc 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9803666 acacaggatccttcccaaattatgcaagcatctcaacctcc 9803706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 37738420 - 37738521
Alignment:
Q  66 tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta 165  Q
    ||||||||| ||||||||||||||||||||  |||| |||| |||||||||||| ||||| |||||||| || |||||||||||||| || || ||||||    
T  37738420 tgaagaaaaaggaaaatattccaaattcttttcagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagagataaagatttctcta 37738519  T
Q  166 ga 167  Q
    ||    
T  37738520 ga 37738521  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 9824163 - 9824248
Alignment:
Q  263 cagaagtttgttgttgataaatagcgcaaacaaccttcatacataacacaggatccttcccaaattatgcaagcatctcaacctcc 348  Q
    |||||||||| ||| || ||| | | || ||| ||||||||||| ||||||||||||| || || | |||| ||||||||||||||    
T  9824163 cagaagtttgctgtcgaaaaagaacacatacagccttcatacattacacaggatcctttccgaagtctgcatgcatctcaacctcc 9824248  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 9813710 - 9813762
Alignment:
Q  296 ccttcatacataacacaggatccttcccaaattatgcaagcatctcaacctcc 348  Q
    ||||||||||||||||||||||||| || || | |||| |||| |||||||||    
T  9813710 ccttcatacataacacaggatcctttccgaagtctgcacgcatttcaacctcc 9813762  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 19814274 - 19814388
Alignment:
Q  44 atgatgaagtagaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatt 143  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| || | ||||||    
T  19814274 atgatgaaggagataactgagatgaagaaaatggaaaatattccaaattcttcacaaaagaagaaggacaaggaagtatatgatcatggaaaacaacatt 19814373  T
Q  144 tctagagatgaatat 158  Q
    | |||| ||||||||    
T  19814374 tttagaaatgaatat 19814388  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 18476727 - 18476614
Alignment:
Q  54 agaagactgagatgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatg 153  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||  ||||||| |||||||||||| ||||| |||||||| || ||||||||| |||||    
T  18476727 agaagattgagatggagaaaatggaaattattccaaattcttcattgaagaagtaggataaggaagaatatgatcatgaaagatgacatttctatagatg 18476628  T
Q  154 aatatctctctaga 167  Q
    ||||| ||||||||    
T  18476627 aatatttctctaga 18476614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 3004024 - 3003923
Alignment:
Q  66 tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta 165  Q
    ||||||||| ||||||||||||||||||||  |||| |||| |||||||||||| ||||| |||||||| || |||||||||||||| || || ||||||    
T  3004024 tgaagaaaaaggaaaatattccaaattcttttcagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagagataaagatttctcta 3003925  T
Q  166 ga 167  Q
    ||    
T  3003924 ga 3003923  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 23681322 - 23681221
Alignment:
Q  66 tgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctcta 165  Q
    ||||||||| ||||||||||||||||||||  |||| |||| |||||||||||| ||||| |||||||| || | |||||||||||| || || ||||||    
T  23681322 tgaagaaaaaggaaaatattccaaattcttgtcagatgaaggaggataaggaagaatatgatcatgaaaaattatatttctagagataaagatttctcta 23681223  T
Q  166 ga 167  Q
    ||    
T  23681222 ga 23681221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 36732278 - 36732380
Alignment:
Q  65 atgaagaaaatggaaaatattccaaattcttcacagaagaagaaggataaggaagtatatggtcatgaaatataacatttctagagatgaatatctctct 164  Q
    |||||||||| ||||||||||||||||||||   ||| |||| |||||||||||| ||||| |||||||| || ||||||||||| || || || |||||    
T  36732278 atgaagaaaaaggaaaatattccaaattcttttaagatgaaggaggataaggaagaatatgatcatgaaaaattacatttctagatataaagatttctct 36732377  T
Q  165 aga 167  Q
    |||    
T  36732378 aga 36732380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 23885000 - 23885073
Alignment:
Q  54 agaagactgagatgaagaaaatggaaaatattccaa---attcttcacagaagaagaaggataaggaagtatat 124  Q
    ||||||||||  ||||||||||||||||||||||||   ||||||| |||| ||||||||||||||||| ||||    
T  23885000 agaagactgaagtgaagaaaatggaaaatattccaaattattcttctcagatgaagaaggataaggaagaatat 23885073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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