View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10135_high_4 (Length: 321)

Name: NF10135_high_4
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10135_high_4
NF10135_high_4
[»] chr7 (2 HSPs)
chr7 (1-305)||(14731174-14731478)
chr7 (208-305)||(1095992-1096089)
[»] chr5 (2 HSPs)
chr5 (46-268)||(17592807-17593035)
chr5 (208-295)||(9891194-9891281)
[»] chr4 (3 HSPs)
chr4 (208-303)||(31236751-31236846)
chr4 (51-214)||(31236536-31236712)
chr4 (216-305)||(31253407-31253495)
[»] chr3 (2 HSPs)
chr3 (215-304)||(16133556-16133645)
chr3 (4-38)||(16133841-16133875)
[»] chr6 (1 HSPs)
chr6 (235-305)||(442571-442641)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14731174 - 14731478
Alignment:
Q  1 ataagattaaataagtagcagaaagtcattgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14731174 ataagattaaataagtagcagaaagtcattgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacct 14731273  T
Q  101 gtcctccaaggagatcttcaatgcttcaagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14731274 gtcctccaaggagatcttcaatgcttcaagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgatt 14731373  T
Q  201 aagaaagagaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccaga 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14731374 aagaaagagaaataacaataaggagaggatgaaatcattcagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccaga 14731473  T
Q  301 atttg 305  Q
    |||||    
T  14731474 atttg 14731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 1096089 - 1095992
Alignment:
Q  208 agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttg 305  Q
    |||| ||||||||||||||||||| ||||||||||||||||||  ||||  ||||||||||||||| ||||||| | || |||||||| |||||||||    
T  1096089 agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaagcagagcatgtccattcttacctgtaacagggagcacctcagaatttg 1095992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 46 - 268
Target Start/End: Original strand, 17592807 - 17593035
Alignment:
Q  46 cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaa------tgcttcaagtttttcaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||    
T  17592807 cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaaccttgatgcttcaagtttttcaaa 17592906  T
Q  140 gtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgattaagaaagagaaataacaataaggagaggatgaaatcatt 239  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  17592907 gtgcctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcacttaagaaagagaaatagcaataaggagaggatgaaatcatt 17593006  T
Q  240 gagaaaacaataaatcagtcagagcatgt 268  Q
    |||||||||||||||||||||||||||||    
T  17593007 gagaaaacaataaatcagtcagagcatgt 17593035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 9891194 - 9891281
Alignment:
Q  208 agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcacc 295  Q
    |||| ||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||| |||||||||||| | ||||||    
T  9891194 agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaatcagagcatgtccattcttacctgcagcaggaagcacc 9891281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 31236751 - 31236846
Alignment:
Q  208 agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatt 303  Q
    |||| ||||||||||||||||||| |||||| |||||||||||  |||| |||||||||||||||| |||||||||||| |||||||| |||||||    
T  31236751 agaactaacaataaggagaggatgtaatcatcgagaaaacaatttatcactcagagcatgtccattcttacctgcagcagggagcacctcagaatt 31236846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 31236536 - 31236712
Alignment:
Q  51 tacagtctacaccactgagacagatagcaaaaat--tgtcatttcacaacctgtcctccaaggagatcttca------atgcttcaagtttttcaaagtg 142  Q
    |||| |||||||||||||||||||||||| || |  |||| ||||||||| |||||||||| ||||||||||      ||||||||||||||||||||||    
T  31236536 tacactctacaccactgagacagatagcacaacttctgtcctttcacaacttgtcctccaacgagatcttcatccttgatgcttcaagtttttcaaagtg 31236635  T
Q  143 tctctgagattaagaagttgtattttt--catgttttagaattcacaaaactc---atcgattaagaaagagaaata 214  Q
     |||||||||||  || ||| |||| |  ||||||||||||| ||||| | ||   |||||||||||||| ||||||    
T  31236636 actctgagattagaaaattgaatttatcacatgttttagaatccacaacattccatatcgattaagaaagggaaata 31236712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 31253407 - 31253495
Alignment:
Q  216 caataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttg 305  Q
    ||||||||| ||||||||  || || ||||| ||||| ||||||| ||||||| |||| |||||||||||| |||||||| |||||||||    
T  31253407 caataaggaaaggatgaagacagtgtgaaaataataa-tcagtcaaagcatgttcattcttacctgcagcagggagcacctcagaatttg 31253495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 16133645 - 16133556
Alignment:
Q  215 acaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaattt 304  Q
    |||||| |||||||||||| ||||||||||||||||  |||||||||||||||| |||| |||||| ||||| | |||| ||||||||||    
T  16133645 acaatatggagaggatgaagtcattgagaaaacaattgatcagtcagagcatgttcattcttacctacagcaggaagcagcccagaattt 16133556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 16133875 - 16133841
Alignment:
Q  4 agattaaataagtagcagaaagtcattgaagacaa 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  16133875 agattaaataagtagcagaaaatcattgaagacaa 16133841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 442641 - 442571
Alignment:
Q  235 tcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttg 305  Q
    ||||||||||||||||  |||| | |||||||||||||| |||||||||| | |||||||| |||||||||    
T  442641 tcattgagaaaacaatttatcaataagagcatgtccattcttacctgcagaagggagcacctcagaatttg 442571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University