View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_high_6 (Length: 304)
Name: NF10135_high_6
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 31583705 - 31583518
Alignment:
| Q |
114 |
ttaatgtatcaaactctatattttatagtttcctagaaacttcacaaagtatggaaattatgatgcattgaaacatgaaat--------cataatagaaa |
205 |
Q |
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| T |
31583705 |
ttaatgtatcaaactctacattttatagcttcctagaaacttcacaaagtatggaaattatgatgcattgaaatatgaaattgatttttcataatataaa |
31583606 |
T |
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| Q |
206 |
catgaaagtgaaaggggagttaaaatcaaattaattttaagctgactaaatcaagattttatgtctatctctagaacgccaatcctat |
293 |
Q |
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| T |
31583605 |
catgaaagtgaaaggggagttaaaatcaaattaattttaagctgactaaatcaagattttatgtctatctctagaacgccaatcctat |
31583518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 31617022 - 31616967
Alignment:
| Q |
139 |
tagtttcctagaaacttcacaaagtatggaaa-ttatgatgcattgaaacatgaaa |
193 |
Q |
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| T |
31617022 |
tagtttcctagaaacttcacaaagtgtagaaaattatgatgcattgaaacatgaaa |
31616967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 31606980 - 31606940
Alignment:
| Q |
235 |
attaattttaagctgactaaatcaagattttatgtctatct |
275 |
Q |
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| T |
31606980 |
attaattttaagctgactaaatcaagatgttaagtttatct |
31606940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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