View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10135_high_8 (Length: 297)
Name: NF10135_high_8
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10135_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 4302239 - 4301972
Alignment:
| Q |
18 |
aagactactgcacctagaacttctcttataggaatgtgtccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgctt |
117 |
Q |
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| T |
4302239 |
aagactactgcacctagaacttctctta--ggaatgtgtccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgctt |
4302142 |
T |
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| Q |
118 |
ggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagttgcaaacgaactcacttgccgctgggtaatcaatggattcgaacac |
217 |
Q |
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| T |
4302141 |
ggaaaatacatcgtctggtgtttttcttgtcccacacaacctacctataatagttgcaaacgaactcacttgccgctgggtaatcaatggattcgaacac |
4302042 |
T |
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| Q |
218 |
tgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttg |
287 |
Q |
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| T |
4302041 |
tgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttg |
4301972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 49100456 - 49100586
Alignment:
| Q |
57 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
156 |
Q |
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| T |
49100456 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtataggcttgacaacagacgcttggaaaatgcaacctctggtgtttttcttgtcccgtgcag |
49100555 |
T |
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| Q |
157 |
cctacctataatagttgcaaacgaactcact |
187 |
Q |
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| T |
49100556 |
cctacctataaacgttgcaaacaaactcact |
49100586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 49112250 - 49112401
Alignment:
| Q |
57 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
156 |
Q |
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||||||||| |||||||| || ||||||||||| ||| |||||||||||| | || ||||| ||| ||| | |||||||||||||||||||| || |
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| T |
49112250 |
ccatatggtaatatctgttattggtttgcttcaaacggtttaggcttgacaatagactcttggtaaacacaacctctgatgtttttcttgtcccttctaa |
49112349 |
T |
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| Q |
157 |
cctacctataatagttgcaaacgaactcacttgccgctgggtaatcaatgga |
208 |
Q |
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| T |
49112350 |
tctacctataatagttgcaaatgaactcacttggcgctgagtgctcaatgga |
49112401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 49112454 - 49112512
Alignment:
| Q |
229 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttg |
287 |
Q |
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| T |
49112454 |
ctaggaacatgttgaattctgcatattggttagaaggaactgaaaacacatttcctttg |
49112512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 49100660 - 49100718
Alignment:
| Q |
229 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttg |
287 |
Q |
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| T |
49100660 |
ctaggaacatgttgaattctgcatattggtttgaagggactgaaaaaacatttcctttg |
49100718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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