View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10135_high_9 (Length: 281)

Name: NF10135_high_9
Description: NF10135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10135_high_9
NF10135_high_9
[»] chr2 (8 HSPs)
chr2 (18-199)||(44692185-44692366)
chr2 (198-251)||(8906996-8907049)
chr2 (197-251)||(27506658-27506712)
chr2 (197-251)||(4506025-4506079)
chr2 (209-251)||(6965136-6965178)
chr2 (209-251)||(40636268-40636310)
chr2 (198-251)||(12337365-12337418)
chr2 (198-246)||(3155353-3155401)
[»] chr5 (15 HSPs)
chr5 (197-251)||(27079144-27079198)
chr5 (209-251)||(19523331-19523373)
chr5 (198-251)||(15480006-15480059)
chr5 (198-251)||(31194528-31194581)
chr5 (198-246)||(36187795-36187843)
chr5 (197-251)||(22986472-22986526)
chr5 (197-251)||(27924214-27924268)
chr5 (197-246)||(16591989-16592038)
chr5 (197-246)||(38869278-38869327)
chr5 (212-251)||(7671065-7671104)
chr5 (212-251)||(16198723-16198762)
chr5 (198-245)||(16799240-16799287)
chr5 (209-251)||(2275022-2275064)
chr5 (209-251)||(34756292-34756334)
chr5 (212-245)||(40389467-40389500)
[»] chr8 (14 HSPs)
chr8 (197-251)||(23606547-23606601)
chr8 (198-251)||(37430076-37430129)
chr8 (212-251)||(10917522-10917561)
chr8 (198-251)||(2952137-2952190)
chr8 (198-251)||(3048435-3048488)
chr8 (198-243)||(33963268-33963313)
chr8 (198-246)||(41879316-41879364)
chr8 (198-246)||(42600919-42600967)
chr8 (209-251)||(13534617-13534659)
chr8 (209-251)||(13624157-13624199)
chr8 (196-246)||(23798177-23798227)
chr8 (209-251)||(45475948-45475990)
chr8 (198-251)||(20003728-20003781)
chr8 (213-249)||(41677106-41677142)
[»] chr1 (19 HSPs)
chr1 (197-251)||(44655883-44655937)
chr1 (198-251)||(6771936-6771989)
chr1 (210-251)||(21740864-21740905)
chr1 (198-251)||(27906646-27906699)
chr1 (212-251)||(19955859-19955898)
chr1 (198-251)||(14146442-14146495)
chr1 (209-246)||(16140202-16140239)
chr1 (194-231)||(23185589-23185626)
chr1 (197-246)||(40501706-40501755)
chr1 (198-246)||(9172940-9172988)
chr1 (198-246)||(9180922-9180970)
chr1 (198-246)||(22865378-22865426)
chr1 (209-251)||(50881571-50881613)
chr1 (198-251)||(5027693-5027746)
chr1 (212-245)||(13913412-13913445)
chr1 (197-246)||(17169103-17169152)
chr1 (214-246)||(6889757-6889789)
chr1 (214-246)||(6891603-6891635)
chr1 (214-246)||(51607374-51607406)
[»] chr7 (12 HSPs)
chr7 (198-251)||(10329327-10329380)
chr7 (198-251)||(12596207-12596260)
chr7 (198-251)||(20091197-20091250)
chr7 (198-250)||(28749843-28749895)
chr7 (198-246)||(29077356-29077404)
chr7 (198-246)||(48983756-48983804)
chr7 (212-251)||(23551002-23551041)
chr7 (209-246)||(8171468-8171505)
chr7 (198-246)||(18776683-18776731)
chr7 (212-246)||(24525613-24525647)
chr7 (198-251)||(25010558-25010611)
chr7 (209-246)||(26254130-26254167)
[»] chr4 (18 HSPs)
chr4 (198-251)||(2790659-2790712)
chr4 (198-251)||(17679536-17679589)
chr4 (198-251)||(32915522-32915575)
chr4 (198-251)||(48209383-48209436)
chr4 (198-251)||(55255394-55255447)
chr4 (198-251)||(34027715-34027768)
chr4 (194-251)||(47129123-47129180)
chr4 (198-251)||(54780915-54780968)
chr4 (214-246)||(54083176-54083208)
chr4 (211-246)||(10428129-10428164)
chr4 (212-247)||(38352197-38352232)
chr4 (198-251)||(5128758-5128811)
chr4 (198-251)||(16922245-16922298)
chr4 (197-246)||(24969738-24969787)
chr4 (209-246)||(34768503-34768540)
chr4 (210-246)||(1105673-1105709)
chr4 (194-246)||(13460312-13460364)
chr4 (214-246)||(37777156-37777188)
[»] chr3 (16 HSPs)
chr3 (198-247)||(50258542-50258591)
chr3 (198-246)||(29620364-29620412)
chr3 (198-246)||(47467824-47467872)
chr3 (197-251)||(38681010-38681064)
chr3 (197-246)||(8073256-8073305)
chr3 (198-251)||(21582907-21582960)
chr3 (198-251)||(36715942-36715995)
chr3 (198-251)||(50939152-50939205)
chr3 (198-246)||(54407073-54407121)
chr3 (197-245)||(54619120-54619168)
chr3 (212-251)||(37168502-37168541)
chr3 (212-245)||(34290568-34290601)
chr3 (198-251)||(43207157-43207210)
chr3 (198-246)||(27078486-27078534)
chr3 (198-246)||(27084283-27084331)
chr3 (198-246)||(48720429-48720477)
[»] scaffold0070 (1 HSPs)
scaffold0070 (198-246)||(1479-1527)
[»] chr6 (10 HSPs)
chr6 (197-251)||(21280680-21280734)
chr6 (197-251)||(27788607-27788661)
chr6 (198-251)||(13727317-13727370)
chr6 (198-251)||(30832443-30832496)
chr6 (210-251)||(33774253-33774294)
chr6 (212-251)||(235157-235196)
chr6 (209-246)||(20711649-20711686)
chr6 (198-251)||(21479630-21479683)
chr6 (198-251)||(27314097-27314150)
chr6 (198-246)||(24710914-24710962)
[»] scaffold0039 (1 HSPs)
scaffold0039 (198-251)||(106670-106723)
[»] scaffold0001 (1 HSPs)
scaffold0001 (198-251)||(183191-183244)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 44692366 - 44692185
Alignment:
Q  18 cttcctagccacctcttcattgaaccaactcggcccaccacaaccctctagattgacaatatccttccaccacctagaggagtttgaaggtcaacaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44692366 cttcctagccacctcttcattgaaccaactcggcccaccacaaccctctagattgacaatatccttccaccacctagaggagtttgaaggacaacaatca 44692267  T
Q  118 ttctcattatccaccaaatcacccgccctctcaccatacctctccataagcacccctttccaaagcgtcttttcctcagtca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692266 ttctcattatccaccaaatcacccgccctctcaccatacctctccataagcacccctttccaaagcgtcttttcctcagtca 44692185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 8906996 - 8907049
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  8906996 cagggccgttcctgagaattcggaggctcggctctgaaaatgaaaagaggccag 8907049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 27506658 - 27506712
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||||| ||||    
T  27506658 tcagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccag 27506712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 4506079 - 4506025
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  4506079 tcagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 4506025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 6965178 - 6965136
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||||||||  ||||||||||| ||||    
T  6965178 ctgagaattcggaggctcggctctggaaatgaaaagaggccag 6965136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 40636310 - 40636268
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||| |||||| |||||||||||| ||||    
T  40636310 ctgagaattcggaggctcagctctgggaatgaaaagaggccag 40636268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 12337365 - 12337418
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||| |||||||||||||  ||||||||||| ||||    
T  12337365 cagggccgtccctgagaattcgaaggctcggctctggaaatgaaaagaggccag 12337418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 3155401 - 3155353
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  |||||||||||||||||||||| | | |||||||||||    
T  3155401 cagggccgtccctgagaattcggaggctcggctttaaaaatgaaaagag 3155353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 27079198 - 27079144
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  27079198 tcagggccgtccctgagaattcggaggctcggctctgagaatgaaaagaggccag 27079144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 19523373 - 19523331
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  19523373 ctgagaattcggaggctcggctctgggaatgaaaagagaccag 19523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 15480006 - 15480059
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||| ||||    
T  15480006 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccag 15480059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 31194528 - 31194581
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||| |||||||||||||||||||| |||||||||||||||||    
T  31194528 cagggccgtccctgaaaattcggaggctcggctctgggaatgaaaagagaccag 31194581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 36187795 - 36187843
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  36187795 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagag 36187843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 22986472 - 22986526
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||   ||||||||||||||||| ||||||||||||||||||| ||||    
T  22986472 tcagggccgtccgtgagaattcggaggctcagctctgagaatgaaaagaggccag 22986526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 27924268 - 27924214
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||| || ||||||||| |||||| |||||||||||||||||| ||||    
T  27924268 tcagggccgtttctaagaattcgggggctcgactctgagaatgaaaagaggccag 27924214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 16591989 - 16592038
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  16591989 tcagggccgtccttgagaatttggaggctcggctctgagaatgaaaagag 16592038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 38869278 - 38869327
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||  || |||||||||||||||||||||| ||||||||||||    
T  38869278 tcagggccgtccctaagaattcggaggctcggctctgggaatgaaaagag 38869327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 7671104 - 7671065
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  7671104 agaattcggaggctcggctctgggaatgaaaagaggccag 7671065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 16198723 - 16198762
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  16198723 agaattcggaggctcggctctgggaatgaaaagaggccag 16198762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 16799240 - 16799287
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaaga 245  Q
    |||||||||  || |||||||||||||||||||||| |||||||||||    
T  16799240 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaaga 16799287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 2275064 - 2275022
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||| |||| |||||||||||| ||||    
T  2275064 ctgagaattcggaggctcggttctgggaatgaaaagaggccag 2275022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 34756292 - 34756334
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||||||||  ||||||||||| ||||    
T  34756292 ctgagaattcggaggctcggctctggaaatgaaaagaggccag 34756334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 40389467 - 40389500
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaaga 245  Q
    |||||||||||||||||||||| |||||||||||    
T  40389467 agaattcggaggctcggctctgggaatgaaaaga 40389500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 23606547 - 23606601
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  || |||||||||||||||||||||| |||||||||||||||||    
T  23606547 tcagggccgtccctaagaattcggaggctcggctctgggaatgaaaagagaccag 23606601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 37430076 - 37430129
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||| ||||    
T  37430076 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccag 37430129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 10917561 - 10917522
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10917561 agaattcggaggctcggctctgagaatgaaaagaggccag 10917522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 2952137 - 2952190
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  2952137 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 2952190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 3048435 - 3048488
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  3048435 cagggccgtctctgagaattcggaggctcggctctggaaatgaaaagaggccag 3048488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 33963268 - 33963313
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaa 243  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||||    
T  33963268 cagggccgttcatgagaattcggaggctcggctttgagaatgaaaa 33963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 41879364 - 41879316
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||| ||||||||||||| ||||||||||||    
T  41879364 cagggccgtccctgagaattcgaaggctcggctctgggaatgaaaagag 41879316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 42600967 - 42600919
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  || ||||||||||||||||||||||| |||||||||||    
T  42600967 cagggccgtccctaagaattcggaggctcggctctgaaaatgaaaagag 42600919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 13534617 - 13534659
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||| |||||||||||||||||||| |||||||||||| ||||    
T  13534617 ctgaaaattcggaggctcggctctgggaatgaaaagaggccag 13534659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 13624157 - 13624199
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||| |||||||||||||||||||| |||||||||||| ||||    
T  13624157 ctgaaaattcggaggctcggctctgggaatgaaaagaggccag 13624199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 23798177 - 23798227
Alignment:
Q  196 gtcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||  || |||||||||||||||||||||| ||| ||||||||    
T  23798177 gtcagggccgtccctaagaattcggaggctcggctctgggaacgaaaagag 23798227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 45475990 - 45475948
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||| | |||||||||||| ||||    
T  45475990 ctgagaattcggaggctcggctcggggaatgaaaagaggccag 45475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 20003728 - 20003781
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||| ||||||||||||| | |||||||||||| ||||    
T  20003728 cagggccgtccctgagaatttggaggctcggctcggggaatgaaaagaggccag 20003781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 41677106 - 41677142
Alignment:
Q  213 gaattcggaggctcggctctgagaatgaaaagagacc 249  Q
    ||||||||||||||||||||| || ||||||||||||    
T  41677106 gaattcggaggctcggctctgtgagtgaaaagagacc 41677142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 44655937 - 44655883
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||||||||    
T  44655937 tcagggccgtccctgagaattcggaggctcggctctggaaatgaaaagagaccag 44655883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 6771989 - 6771936
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||| ||||    
T  6771989 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccag 6771936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 21740864 - 21740905
Alignment:
Q  210 tgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  21740864 tgagaattcggaggctcggctctgagaatgaaaagaggccag 21740905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 27906646 - 27906699
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||| ||||    
T  27906646 cagggccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccag 27906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 19955898 - 19955859
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  19955898 agaattcggaggctcggctctgagaatgaaaagaggccag 19955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 14146495 - 14146442
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||  |||||||||||| ||||    
T  14146495 cagggccgtccctgagaattcggaggctcggctcttggaatgaaaagaggccag 14146442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 16140239 - 16140202
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16140239 ctgagaattcggaggctcggctctgggaatgaaaagag 16140202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 23185626 - 23185589
Alignment:
Q  194 cagtcagggccgttgctgagaattcggaggctcggctc 231  Q
    |||||||||||||| |||||||||||||||||||||||    
T  23185626 cagtcagggccgttcctgagaattcggaggctcggctc 23185589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 40501706 - 40501755
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||  || |||||||||||||||| ||||||||||||||||||    
T  40501706 tcagggccgtccctaagaattcggaggctcgactctgagaatgaaaagag 40501755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 9172940 - 9172988
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  || |||||||||||||||||||||| ||||||||||||    
T  9172940 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagag 9172988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 9180922 - 9180970
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  || |||||||||||||||||||||| ||||||||||||    
T  9180922 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagag 9180970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 22865378 - 22865426
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  |||||||||||||||| |||||||| ||||||||||||    
T  22865378 cagggccgtccctgagaattcggaggcacggctctgggaatgaaaagag 22865426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 50881613 - 50881571
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||||||||  ||||||||||| ||||    
T  50881613 ctgagaattcggaggctcggctctggaaatgaaaagaggccag 50881571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 5027746 - 5027693
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||| ||| | |||||||||||| ||||    
T  5027746 cagggccgtccctgagaattcggaggctcgactcggggaatgaaaagaggccag 5027693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 13913412 - 13913445
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaaga 245  Q
    |||||||||||||| |||||||||||||||||||    
T  13913412 agaattcggaggcttggctctgagaatgaaaaga 13913445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 17169152 - 17169103
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||  || ||||||||||||||||||||||  |||||||||||    
T  17169152 tcagggccgtccctaagaattcggaggctcggctctggaaatgaaaagag 17169103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 6889789 - 6889757
Alignment:
Q  214 aattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||||||| |||||||||||||||||    
T  6889789 aattcggaggctcggttctgagaatgaaaagag 6889757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 6891635 - 6891603
Alignment:
Q  214 aattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||||||| |||||||||||||||||    
T  6891635 aattcggaggctcggttctgagaatgaaaagag 6891603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 51607374 - 51607406
Alignment:
Q  214 aattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||| ||||||||||||    
T  51607374 aattcggaggctcggctctgggaatgaaaagag 51607406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 10329327 - 10329380
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||| || |||||||||||||||||||||| |||||||||||| ||||    
T  10329327 cagggccgttcctaagaattcggaggctcggctctgggaatgaaaagaggccag 10329380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 12596207 - 12596260
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||| ||||    
T  12596207 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccag 12596260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 20091197 - 20091250
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || ||||||||||||||||||||||||||||||||||| ||||    
T  20091197 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccag 20091250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 28749895 - 28749843
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagacca 250  Q
    |||||||||  |||| |||||||||||||||||||| ||||||||||||||||    
T  28749895 cagggccgtccctgaaaattcggaggctcggctctgggaatgaaaagagacca 28749843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 29077404 - 29077356
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  29077404 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagag 29077356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 48983756 - 48983804
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||    
T  48983756 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagag 48983804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 23551002 - 23551041
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  23551002 agaattcggaggctcggctctgagaatgaaaagaggccag 23551041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 8171468 - 8171505
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  8171468 ctgagaattcggaggctcggctctgggaatgaaaagag 8171505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 18776683 - 18776731
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  |||||||||||||||||||||||||  |||||||||||    
T  18776683 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagag 18776731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 24525613 - 24525647
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||||| ||||||||||||    
T  24525613 agaattcggaggctcggctctgggaatgaaaagag 24525647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 25010611 - 25010558
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || ||||||||||||||||||||||  ||||||||||| ||||    
T  25010611 cagggccgtccctaagaattcggaggctcggctctggaaatgaaaagaggccag 25010558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 26254167 - 26254130
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||||| || ||||||||||||    
T  26254167 ctgagaattcggaggctcggctttgggaatgaaaagag 26254130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 2790659 - 2790712
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || |||||||||||||||||||||| |||||||||||||||||    
T  2790659 cagggccgtctctaagaattcggaggctcggctctgggaatgaaaagagaccag 2790712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 17679589 - 17679536
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||| |||| |||||||||||||||||    
T  17679589 cagggccgtctctgagaattcggaggctcggttctgggaatgaaaagagaccag 17679536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 32915575 - 32915522
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||| ||||    
T  32915575 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccag 32915522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 48209436 - 48209383
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||||||||||| || ||||||||||||||    
T  48209436 cagggccgtccctgagaattcggaggctcggctctgggagtgaaaagagaccag 48209383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 55255447 - 55255394
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||| ||||    
T  55255447 cagggccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccag 55255394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 34027768 - 34027715
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || |||||||||||||||||||||| |||||||||||| ||||    
T  34027768 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccag 34027715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 47129180 - 47129123
Alignment:
Q  194 cagtcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||| |||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  47129180 cagtcagagccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 47129123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 54780968 - 54780915
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||||||||| ||||||| |||||||||||| ||||    
T  54780968 cagggccgtccctgagaattcggaggcttggctctgggaatgaaaagaggccag 54780915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 54083176 - 54083208
Alignment:
Q  214 aattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||||||||||||||||    
T  54083176 aattcggaggctcggctctgagaatgaaaagag 54083208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 10428129 - 10428164
Alignment:
Q  211 gagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10428129 gagaattcggaggctcggctctgggaatgaaaagag 10428164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 38352197 - 38352232
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagaga 247  Q
    |||||||||||||||||||||| |||||||||||||    
T  38352197 agaattcggaggctcggctctgggaatgaaaagaga 38352232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 5128758 - 5128811
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||  |||||||||||||| |||||||||||| ||||    
T  5128758 cagggccgtccctgagaatttagaggctcggctctgggaatgaaaagaggccag 5128811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 16922245 - 16922298
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||| ||||||||| || || |||||||||||||||||    
T  16922245 cagggccgtccctgagaatttggaggctcgactttgggaatgaaaagagaccag 16922298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 24969787 - 24969738
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||  || |||||||||||||||| ||||| ||||||||||||    
T  24969787 tcagggccgtccctaagaattcggaggctcgactctgggaatgaaaagag 24969738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 34768503 - 34768540
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||||| || ||||||||||||    
T  34768503 ctgagaattcggaggctcggctttgggaatgaaaagag 34768540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 1105709 - 1105673
Alignment:
Q  210 tgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  1105709 tgagaattcagaggctcggctctgggaatgaaaagag 1105673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 13460364 - 13460312
Alignment:
Q  194 cagtcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||   |||||||||||||||||| ||||| |||| |||||||    
T  13460364 cagtcagggccgtccttgagaattcggaggctcgactctgggaataaaaagag 13460312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 37777156 - 37777188
Alignment:
Q  214 aattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||| ||||||||||||    
T  37777156 aattcggaggctcggctctgggaatgaaaagag 37777188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 50258542 - 50258591
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagaga 247  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  50258542 cagggccgttcctgagaattcggaggctcggctctgggaacgaaaagaga 50258591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 29620364 - 29620412
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  29620364 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagag 29620412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 47467872 - 47467824
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  47467872 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagag 47467824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 38681010 - 38681064
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  38681010 tcagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 38681064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 8073256 - 8073305
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    ||||||||||  |||||||||||||||||||||||||  |||||||||||    
T  8073256 tcagggccgtccctgagaattcggaggctcggctctggaaatgaaaagag 8073305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21582960 - 21582907
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||| ||||    
T  21582960 cagggccgtccctgagaattcggaggctcggctttgggaatgaaaagaggccag 21582907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 36715942 - 36715995
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  36715942 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 36715995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 50939152 - 50939205
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || ||||||||| ||||||||||||||||||||||||| ||||    
T  50939152 cagggccgtccctaagaattcgggggctcggctctgagaatgaaaagaggccag 50939205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 54407073 - 54407121
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  || |||||||||||||||||||||| ||||||||||||    
T  54407073 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagag 54407121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 54619120 - 54619168
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaaga 245  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||    
T  54619120 tcagggccgtccctgagaattcggaggctcggctctggaaatgaaaaga 54619168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 37168541 - 37168502
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  37168541 agaattcggaggctcggctctgggaatgaaaagaggccag 37168502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 34290568 - 34290601
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaaga 245  Q
    |||||||||||||||||||||| |||||||||||    
T  34290568 agaattcggaggctcggctctgggaatgaaaaga 34290601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 43207157 - 43207210
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || |||||| ||||||||||||||| |||||||||||| ||||    
T  43207157 cagggccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccag 43207210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 27078486 - 27078534
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||| |||||||  |||||||||||    
T  27078486 cagggccgtccctgagaattcggaggcttggctctggaaatgaaaagag 27078534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 27084283 - 27084331
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||| |||||||  |||||||||||    
T  27084283 cagggccgtccctgagaattcggaggcttggctctggaaatgaaaagag 27084331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 48720429 - 48720477
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  || |||||| ||||||||||||||| ||||||||||||    
T  48720429 cagggccgtccctaagaattgggaggctcggctctgggaatgaaaagag 48720477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 1527 - 1479
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  1527 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagag 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 21280734 - 21280680
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  21280734 tcagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 21280680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 27788607 - 27788661
Alignment:
Q  197 tcagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||  || |||||||||||||||||||||| |||||||||||| ||||    
T  27788607 tcagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccag 27788661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 13727317 - 13727370
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||| ||||    
T  13727317 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccag 13727370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 30832443 - 30832496
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||||| ||||||||||||| |||||||||||| ||||    
T  30832443 cagggccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggccag 30832496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 33774294 - 33774253
Alignment:
Q  210 tgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  33774294 tgagaattcggaggctcggctctgaaaatgaaaagaggccag 33774253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 235157 - 235196
Alignment:
Q  212 agaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  235157 agaattcggaggttcggctatgagaatgaaaagagaccag 235196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 20711649 - 20711686
Alignment:
Q  209 ctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  20711649 ctgagaattcggaggctcggttctgggaatgaaaagag 20711686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21479683 - 21479630
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  ||||||||| |||||||||||||||  ||||||||||| ||||    
T  21479683 cagggccgtctctgagaatttggaggctcggctctggaaatgaaaagaggccag 21479630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 27314097 - 27314150
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||| |||||||||||||| ||||| |||||||||||| ||||    
T  27314097 cagggccgtccctgaaaattcggaggctcgactctgggaatgaaaagaggccag 27314150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 24710914 - 24710962
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagag 246  Q
    |||||||||  |||||||||||||||||| |||| | ||||||||||||    
T  24710914 cagggccgtccctgagaattcggaggctcagctcagggaatgaaaagag 24710962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 106723 - 106670
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  || |||||| ||||||||||||||| |||||||||||| ||||    
T  106723 cagggccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccag 106670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 183244 - 183191
Alignment:
Q  198 cagggccgttgctgagaattcggaggctcggctctgagaatgaaaagagaccag 251  Q
    |||||||||  |||| ||||| |||||||||||||| |||||||||||| ||||    
T  183244 cagggccgtccctgaaaattcagaggctcggctctgggaatgaaaagaggccag 183191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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